miRNA display CGI


Results 1 - 20 of 49 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10576 5' -52.4 NC_002687.1 + 309547 1.13 0.011837
Target:  5'- cCCGUCAACGUCAUGGAACGUCGGCGGu -3'
miRNA:   3'- -GGCAGUUGCAGUACCUUGCAGCCGCC- -5'
10576 5' -52.4 NC_002687.1 + 71678 0.76 0.83827
Target:  5'- gCCGggGGCGUCG-GGAAgGUCGGCGa -3'
miRNA:   3'- -GGCagUUGCAGUaCCUUgCAGCCGCc -5'
10576 5' -52.4 NC_002687.1 + 114987 0.75 0.888156
Target:  5'- cCCGUCGA--UCAcgGGGACGUCGGCu- -3'
miRNA:   3'- -GGCAGUUgcAGUa-CCUUGCAGCCGcc -5'
10576 5' -52.4 NC_002687.1 + 75326 0.75 0.900653
Target:  5'- aCUGUCGACGUgGuauacUGGAAagaUCGGCGGg -3'
miRNA:   3'- -GGCAGUUGCAgU-----ACCUUgc-AGCCGCC- -5'
10576 5' -52.4 NC_002687.1 + 215393 0.74 0.90659
Target:  5'- gCGUgGACGUC-UGGAAacaGUgCGGCGGc -3'
miRNA:   3'- gGCAgUUGCAGuACCUUg--CA-GCCGCC- -5'
10576 5' -52.4 NC_002687.1 + 86930 0.74 0.90659
Target:  5'- aCCG-CGAguuuCGUC-UGGAGCGccUCGGCGGg -3'
miRNA:   3'- -GGCaGUU----GCAGuACCUUGC--AGCCGCC- -5'
10576 5' -52.4 NC_002687.1 + 24078 0.73 0.946431
Target:  5'- gCGcCAGCGaugcCGgaGGGGCGUCGGCGGu -3'
miRNA:   3'- gGCaGUUGCa---GUa-CCUUGCAGCCGCC- -5'
10576 5' -52.4 NC_002687.1 + 57119 0.73 0.950456
Target:  5'- cCCGUCAACGggAUGcuGCaUCGGCGGc -3'
miRNA:   3'- -GGCAGUUGCagUACcuUGcAGCCGCC- -5'
10576 5' -52.4 NC_002687.1 + 123081 0.73 0.950456
Target:  5'- aCGUCGACGUCAcGGA-CGggaGGgGGg -3'
miRNA:   3'- gGCAGUUGCAGUaCCUuGCag-CCgCC- -5'
10576 5' -52.4 NC_002687.1 + 40416 0.72 0.961301
Target:  5'- cCCGgCGACGcCAUGuccUGUCGGCGGg -3'
miRNA:   3'- -GGCaGUUGCaGUACcuuGCAGCCGCC- -5'
10576 5' -52.4 NC_002687.1 + 182913 0.72 0.967543
Target:  5'- uCCGgCAugGcCGUGGGACGgUGGCGa -3'
miRNA:   3'- -GGCaGUugCaGUACCUUGCaGCCGCc -5'
10576 5' -52.4 NC_002687.1 + 84722 0.71 0.973035
Target:  5'- uCCGUCAcCGUCGUcGcGACGUugacgguugCGGCGGa -3'
miRNA:   3'- -GGCAGUuGCAGUA-CcUUGCA---------GCCGCC- -5'
10576 5' -52.4 NC_002687.1 + 280918 0.71 0.974048
Target:  5'- gCC-UCAGCGaugCcgGGGgcccguguugaagcaGCGUCGGCGGg -3'
miRNA:   3'- -GGcAGUUGCa--GuaCCU---------------UGCAGCCGCC- -5'
10576 5' -52.4 NC_002687.1 + 328273 0.71 0.977822
Target:  5'- aCGguggcaggCAGCGUUgGUGGAcaACGUCGGCGa -3'
miRNA:   3'- gGCa-------GUUGCAG-UACCU--UGCAGCCGCc -5'
10576 5' -52.4 NC_002687.1 + 84359 0.7 0.981951
Target:  5'- aCCGUCAACGUCGc--GACGaCGGUGa -3'
miRNA:   3'- -GGCAGUUGCAGUaccUUGCaGCCGCc -5'
10576 5' -52.4 NC_002687.1 + 95020 0.7 0.981951
Target:  5'- --cUCAAaGUCAUGGGcucaAUGUUGGCGGa -3'
miRNA:   3'- ggcAGUUgCAGUACCU----UGCAGCCGCC- -5'
10576 5' -52.4 NC_002687.1 + 126319 0.7 0.985474
Target:  5'- uCCGUUuuCGUCuucGGACGUUGGCGu -3'
miRNA:   3'- -GGCAGuuGCAGuacCUUGCAGCCGCc -5'
10576 5' -52.4 NC_002687.1 + 226951 0.7 0.989742
Target:  5'- uCCGUCGGCugccgGUgGUGG--UGUCGGUGGc -3'
miRNA:   3'- -GGCAGUUG-----CAgUACCuuGCAGCCGCC- -5'
10576 5' -52.4 NC_002687.1 + 69497 0.69 0.991993
Target:  5'- ---cCGACGUgGUGGuugucgucaccGACGUCGGCGa -3'
miRNA:   3'- ggcaGUUGCAgUACC-----------UUGCAGCCGCc -5'
10576 5' -52.4 NC_002687.1 + 256624 0.69 0.992868
Target:  5'- aUCGUCAACGaCAacgaUGGGgucGCGcucgcgccaauguUCGGCGGg -3'
miRNA:   3'- -GGCAGUUGCaGU----ACCU---UGC-------------AGCCGCC- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.