miRNA display CGI


Results 21 - 40 of 49 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10576 5' -52.4 NC_002687.1 + 109020 0.69 0.992961
Target:  5'- gCGUCuuGCGUCu--GAucuUGUCGGCGGa -3'
miRNA:   3'- gGCAGu-UGCAGuacCUu--GCAGCCGCC- -5'
10576 5' -52.4 NC_002687.1 + 170162 0.69 0.992961
Target:  5'- gUGUCGACGUCG----GCGUCGGCc- -3'
miRNA:   3'- gGCAGUUGCAGUaccuUGCAGCCGcc -5'
10576 5' -52.4 NC_002687.1 + 155024 0.69 0.992961
Target:  5'- aCGaUCGugGUCgAUGGAucuACGgUGGCGGu -3'
miRNA:   3'- gGC-AGUugCAG-UACCU---UGCaGCCGCC- -5'
10576 5' -52.4 NC_002687.1 + 145388 0.69 0.993833
Target:  5'- --aUCAGCGagGUGGAGaucgaGaUCGGCGGg -3'
miRNA:   3'- ggcAGUUGCagUACCUUg----C-AGCCGCC- -5'
10576 5' -52.4 NC_002687.1 + 77440 0.69 0.993833
Target:  5'- uCCGUCGACG----GGAGCGUCGuGCc- -3'
miRNA:   3'- -GGCAGUUGCaguaCCUUGCAGC-CGcc -5'
10576 5' -52.4 NC_002687.1 + 99225 0.69 0.994541
Target:  5'- uUGUCAAagGUCggGGAugGUguuggcucccacgCGGCGGg -3'
miRNA:   3'- gGCAGUUg-CAGuaCCUugCA-------------GCCGCC- -5'
10576 5' -52.4 NC_002687.1 + 55725 0.68 0.99525
Target:  5'- gCGUCucuCGUCGUGGAagAUGUUGagaacauGCGGg -3'
miRNA:   3'- gGCAGuu-GCAGUACCU--UGCAGC-------CGCC- -5'
10576 5' -52.4 NC_002687.1 + 255410 0.68 0.995317
Target:  5'- gUCGUCAAUGUacUGGAGgGccUCGGCGu -3'
miRNA:   3'- -GGCAGUUGCAguACCUUgC--AGCCGCc -5'
10576 5' -52.4 NC_002687.1 + 256681 0.68 0.996987
Target:  5'- gUCGgcagCAACGUCAuucacaUGGAACacccCGGUGGa -3'
miRNA:   3'- -GGCa---GUUGCAGU------ACCUUGca--GCCGCC- -5'
10576 5' -52.4 NC_002687.1 + 96120 0.68 0.997419
Target:  5'- uUGUCGAcgauCGUCGUGGuguuUGUUGGCGu -3'
miRNA:   3'- gGCAGUU----GCAGUACCuu--GCAGCCGCc -5'
10576 5' -52.4 NC_002687.1 + 290514 0.67 0.997763
Target:  5'- cCCGaaAACGUCAUGGAGgauCGUCGcaguucgacggaaGUGGc -3'
miRNA:   3'- -GGCagUUGCAGUACCUU---GCAGC-------------CGCC- -5'
10576 5' -52.4 NC_002687.1 + 249566 0.67 0.998419
Target:  5'- gCCGuguagaUCGAUGagGUccGGGGCGUCGGaCGGa -3'
miRNA:   3'- -GGC------AGUUGCagUA--CCUUGCAGCC-GCC- -5'
10576 5' -52.4 NC_002687.1 + 157657 0.67 0.998645
Target:  5'- gCUGUUAGCGUUgaGUGcGAAuucauuuCGUCGGCGc -3'
miRNA:   3'- -GGCAGUUGCAG--UAC-CUU-------GCAGCCGCc -5'
10576 5' -52.4 NC_002687.1 + 163996 0.67 0.998669
Target:  5'- uUCGUCggUGUCGaGGucguCGUCGGUa- -3'
miRNA:   3'- -GGCAGuuGCAGUaCCuu--GCAGCCGcc -5'
10576 5' -52.4 NC_002687.1 + 251498 0.67 0.998884
Target:  5'- aCCGUCAAcCGUCGgcuGACGUCcaGGCuGGu -3'
miRNA:   3'- -GGCAGUU-GCAGUaccUUGCAG--CCG-CC- -5'
10576 5' -52.4 NC_002687.1 + 270682 0.67 0.998884
Target:  5'- -gGUUGGCGUCuGUGGAGCGcgCGcGCGu -3'
miRNA:   3'- ggCAGUUGCAG-UACCUUGCa-GC-CGCc -5'
10576 5' -52.4 NC_002687.1 + 123705 0.66 0.99907
Target:  5'- cCCG-CAugGUCA----ACGUCGGCaGGu -3'
miRNA:   3'- -GGCaGUugCAGUaccuUGCAGCCG-CC- -5'
10576 5' -52.4 NC_002687.1 + 74048 0.66 0.999362
Target:  5'- gCCGUCGACcuauGUCucUGcGAGCGcUUGGCGu -3'
miRNA:   3'- -GGCAGUUG----CAGu-AC-CUUGC-AGCCGCc -5'
10576 5' -52.4 NC_002687.1 + 297347 0.66 0.999362
Target:  5'- aCCGagGACGcgcgCgAUGG--UGUCGGCGGa -3'
miRNA:   3'- -GGCagUUGCa---G-UACCuuGCAGCCGCC- -5'
10576 5' -52.4 NC_002687.1 + 225216 0.66 0.999362
Target:  5'- aCCGUgcCGGCGcCGcc--GCGUCGGCGGc -3'
miRNA:   3'- -GGCA--GUUGCaGUaccuUGCAGCCGCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.