miRNA display CGI


Results 21 - 40 of 49 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10576 5' -52.4 NC_002687.1 + 256681 0.68 0.996987
Target:  5'- gUCGgcagCAACGUCAuucacaUGGAACacccCGGUGGa -3'
miRNA:   3'- -GGCa---GUUGCAGU------ACCUUGca--GCCGCC- -5'
10576 5' -52.4 NC_002687.1 + 255410 0.68 0.995317
Target:  5'- gUCGUCAAUGUacUGGAGgGccUCGGCGu -3'
miRNA:   3'- -GGCAGUUGCAguACCUUgC--AGCCGCc -5'
10576 5' -52.4 NC_002687.1 + 55725 0.68 0.99525
Target:  5'- gCGUCucuCGUCGUGGAagAUGUUGagaacauGCGGg -3'
miRNA:   3'- gGCAGuu-GCAGUACCU--UGCAGC-------CGCC- -5'
10576 5' -52.4 NC_002687.1 + 99225 0.69 0.994541
Target:  5'- uUGUCAAagGUCggGGAugGUguuggcucccacgCGGCGGg -3'
miRNA:   3'- gGCAGUUg-CAGuaCCUugCA-------------GCCGCC- -5'
10576 5' -52.4 NC_002687.1 + 77440 0.69 0.993833
Target:  5'- uCCGUCGACG----GGAGCGUCGuGCc- -3'
miRNA:   3'- -GGCAGUUGCaguaCCUUGCAGC-CGcc -5'
10576 5' -52.4 NC_002687.1 + 145388 0.69 0.993833
Target:  5'- --aUCAGCGagGUGGAGaucgaGaUCGGCGGg -3'
miRNA:   3'- ggcAGUUGCagUACCUUg----C-AGCCGCC- -5'
10576 5' -52.4 NC_002687.1 + 170162 0.69 0.992961
Target:  5'- gUGUCGACGUCG----GCGUCGGCc- -3'
miRNA:   3'- gGCAGUUGCAGUaccuUGCAGCCGcc -5'
10576 5' -52.4 NC_002687.1 + 155024 0.69 0.992961
Target:  5'- aCGaUCGugGUCgAUGGAucuACGgUGGCGGu -3'
miRNA:   3'- gGC-AGUugCAG-UACCU---UGCaGCCGCC- -5'
10576 5' -52.4 NC_002687.1 + 109020 0.69 0.992961
Target:  5'- gCGUCuuGCGUCu--GAucuUGUCGGCGGa -3'
miRNA:   3'- gGCAGu-UGCAGuacCUu--GCAGCCGCC- -5'
10576 5' -52.4 NC_002687.1 + 256624 0.69 0.992868
Target:  5'- aUCGUCAACGaCAacgaUGGGgucGCGcucgcgccaauguUCGGCGGg -3'
miRNA:   3'- -GGCAGUUGCaGU----ACCU---UGC-------------AGCCGCC- -5'
10576 5' -52.4 NC_002687.1 + 69497 0.69 0.991993
Target:  5'- ---cCGACGUgGUGGuugucgucaccGACGUCGGCGa -3'
miRNA:   3'- ggcaGUUGCAgUACC-----------UUGCAGCCGCc -5'
10576 5' -52.4 NC_002687.1 + 226951 0.7 0.989742
Target:  5'- uCCGUCGGCugccgGUgGUGG--UGUCGGUGGc -3'
miRNA:   3'- -GGCAGUUG-----CAgUACCuuGCAGCCGCC- -5'
10576 5' -52.4 NC_002687.1 + 126319 0.7 0.985474
Target:  5'- uCCGUUuuCGUCuucGGACGUUGGCGu -3'
miRNA:   3'- -GGCAGuuGCAGuacCUUGCAGCCGCc -5'
10576 5' -52.4 NC_002687.1 + 95020 0.7 0.981951
Target:  5'- --cUCAAaGUCAUGGGcucaAUGUUGGCGGa -3'
miRNA:   3'- ggcAGUUgCAGUACCU----UGCAGCCGCC- -5'
10576 5' -52.4 NC_002687.1 + 84359 0.7 0.981951
Target:  5'- aCCGUCAACGUCGc--GACGaCGGUGa -3'
miRNA:   3'- -GGCAGUUGCAGUaccUUGCaGCCGCc -5'
10576 5' -52.4 NC_002687.1 + 328273 0.71 0.977822
Target:  5'- aCGguggcaggCAGCGUUgGUGGAcaACGUCGGCGa -3'
miRNA:   3'- gGCa-------GUUGCAG-UACCU--UGCAGCCGCc -5'
10576 5' -52.4 NC_002687.1 + 280918 0.71 0.974048
Target:  5'- gCC-UCAGCGaugCcgGGGgcccguguugaagcaGCGUCGGCGGg -3'
miRNA:   3'- -GGcAGUUGCa--GuaCCU---------------UGCAGCCGCC- -5'
10576 5' -52.4 NC_002687.1 + 84722 0.71 0.973035
Target:  5'- uCCGUCAcCGUCGUcGcGACGUugacgguugCGGCGGa -3'
miRNA:   3'- -GGCAGUuGCAGUA-CcUUGCA---------GCCGCC- -5'
10576 5' -52.4 NC_002687.1 + 182913 0.72 0.967543
Target:  5'- uCCGgCAugGcCGUGGGACGgUGGCGa -3'
miRNA:   3'- -GGCaGUugCaGUACCUUGCaGCCGCc -5'
10576 5' -52.4 NC_002687.1 + 40416 0.72 0.961301
Target:  5'- cCCGgCGACGcCAUGuccUGUCGGCGGg -3'
miRNA:   3'- -GGCaGUUGCaGUACcuuGCAGCCGCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.