Results 41 - 49 of 49 are showing below:
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| ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value
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| Predicted miRNA align pattern | |||||||
| 10576 | 5' | -52.4 | NC_002687.1 | + | 123081 | 0.73 | 0.950456 |
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Target: 5'- aCGUCGACGUCAcGGA-CGggaGGgGGg -3' miRNA: 3'- gGCAGUUGCAGUaCCUuGCag-CCgCC- -5' |
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| 10576 | 5' | -52.4 | NC_002687.1 | + | 57119 | 0.73 | 0.950456 |
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Target: 5'- cCCGUCAACGggAUGcuGCaUCGGCGGc -3' miRNA: 3'- -GGCAGUUGCagUACcuUGcAGCCGCC- -5' |
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| 10576 | 5' | -52.4 | NC_002687.1 | + | 24078 | 0.73 | 0.946431 |
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Target: 5'- gCGcCAGCGaugcCGgaGGGGCGUCGGCGGu -3' miRNA: 3'- gGCaGUUGCa---GUa-CCUUGCAGCCGCC- -5' |
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| 10576 | 5' | -52.4 | NC_002687.1 | + | 86930 | 0.74 | 0.90659 |
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Target: 5'- aCCG-CGAguuuCGUC-UGGAGCGccUCGGCGGg -3' miRNA: 3'- -GGCaGUU----GCAGuACCUUGC--AGCCGCC- -5' |
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| 10576 | 5' | -52.4 | NC_002687.1 | + | 215393 | 0.74 | 0.90659 |
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Target: 5'- gCGUgGACGUC-UGGAAacaGUgCGGCGGc -3' miRNA: 3'- gGCAgUUGCAGuACCUUg--CA-GCCGCC- -5' |
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| 10576 | 5' | -52.4 | NC_002687.1 | + | 75326 | 0.75 | 0.900653 |
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Target: 5'- aCUGUCGACGUgGuauacUGGAAagaUCGGCGGg -3' miRNA: 3'- -GGCAGUUGCAgU-----ACCUUgc-AGCCGCC- -5' |
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| 10576 | 5' | -52.4 | NC_002687.1 | + | 114987 | 0.75 | 0.888156 |
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Target: 5'- cCCGUCGA--UCAcgGGGACGUCGGCu- -3' miRNA: 3'- -GGCAGUUgcAGUa-CCUUGCAGCCGcc -5' |
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| 10576 | 5' | -52.4 | NC_002687.1 | + | 71678 | 0.76 | 0.83827 |
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Target: 5'- gCCGggGGCGUCG-GGAAgGUCGGCGa -3' miRNA: 3'- -GGCagUUGCAGUaCCUUgCAGCCGCc -5' |
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| 10576 | 5' | -52.4 | NC_002687.1 | + | 309547 | 1.13 | 0.011837 |
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Target: 5'- cCCGUCAACGUCAUGGAACGUCGGCGGu -3' miRNA: 3'- -GGCAGUUGCAGUACCUUGCAGCCGCC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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