miRNA display CGI


Results 21 - 40 of 49 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10576 5' -52.4 NC_002687.1 + 123081 0.73 0.950456
Target:  5'- aCGUCGACGUCAcGGA-CGggaGGgGGg -3'
miRNA:   3'- gGCAGUUGCAGUaCCUuGCag-CCgCC- -5'
10576 5' -52.4 NC_002687.1 + 123705 0.66 0.99907
Target:  5'- cCCG-CAugGUCA----ACGUCGGCaGGu -3'
miRNA:   3'- -GGCaGUugCAGUaccuUGCAGCCG-CC- -5'
10576 5' -52.4 NC_002687.1 + 126319 0.7 0.985474
Target:  5'- uCCGUUuuCGUCuucGGACGUUGGCGu -3'
miRNA:   3'- -GGCAGuuGCAGuacCUUGCAGCCGCc -5'
10576 5' -52.4 NC_002687.1 + 133789 0.66 0.999362
Target:  5'- ---aCGAgGUUGUGGcaAGCGUgGGCGGg -3'
miRNA:   3'- ggcaGUUgCAGUACC--UUGCAgCCGCC- -5'
10576 5' -52.4 NC_002687.1 + 145388 0.69 0.993833
Target:  5'- --aUCAGCGagGUGGAGaucgaGaUCGGCGGg -3'
miRNA:   3'- ggcAGUUGCagUACCUUg----C-AGCCGCC- -5'
10576 5' -52.4 NC_002687.1 + 155024 0.69 0.992961
Target:  5'- aCGaUCGugGUCgAUGGAucuACGgUGGCGGu -3'
miRNA:   3'- gGC-AGUugCAG-UACCU---UGCaGCCGCC- -5'
10576 5' -52.4 NC_002687.1 + 157657 0.67 0.998645
Target:  5'- gCUGUUAGCGUUgaGUGcGAAuucauuuCGUCGGCGc -3'
miRNA:   3'- -GGCAGUUGCAG--UAC-CUU-------GCAGCCGCc -5'
10576 5' -52.4 NC_002687.1 + 163996 0.67 0.998669
Target:  5'- uUCGUCggUGUCGaGGucguCGUCGGUa- -3'
miRNA:   3'- -GGCAGuuGCAGUaCCuu--GCAGCCGcc -5'
10576 5' -52.4 NC_002687.1 + 169676 0.66 0.999572
Target:  5'- gCCGUUcuUGUgGUGGAcgAUGUCGGaaaaGGu -3'
miRNA:   3'- -GGCAGuuGCAgUACCU--UGCAGCCg---CC- -5'
10576 5' -52.4 NC_002687.1 + 170162 0.69 0.992961
Target:  5'- gUGUCGACGUCG----GCGUCGGCc- -3'
miRNA:   3'- gGCAGUUGCAGUaccuUGCAGCCGcc -5'
10576 5' -52.4 NC_002687.1 + 171073 0.66 0.999652
Target:  5'- cCCGgagaggaCGGCGUaGUGGAGCGgguaGGCGu -3'
miRNA:   3'- -GGCa------GUUGCAgUACCUUGCag--CCGCc -5'
10576 5' -52.4 NC_002687.1 + 182913 0.72 0.967543
Target:  5'- uCCGgCAugGcCGUGGGACGgUGGCGa -3'
miRNA:   3'- -GGCaGUugCaGUACCUUGCaGCCGCc -5'
10576 5' -52.4 NC_002687.1 + 215393 0.74 0.90659
Target:  5'- gCGUgGACGUC-UGGAAacaGUgCGGCGGc -3'
miRNA:   3'- gGCAgUUGCAGuACCUUg--CA-GCCGCC- -5'
10576 5' -52.4 NC_002687.1 + 225216 0.66 0.999362
Target:  5'- aCCGUgcCGGCGcCGcc--GCGUCGGCGGc -3'
miRNA:   3'- -GGCA--GUUGCaGUaccuUGCAGCCGCC- -5'
10576 5' -52.4 NC_002687.1 + 226951 0.7 0.989742
Target:  5'- uCCGUCGGCugccgGUgGUGG--UGUCGGUGGc -3'
miRNA:   3'- -GGCAGUUG-----CAgUACCuuGCAGCCGCC- -5'
10576 5' -52.4 NC_002687.1 + 237448 0.66 0.999572
Target:  5'- gCGUCGACacccUCAgauguaucaagGcGGACGUCGGCGa -3'
miRNA:   3'- gGCAGUUGc---AGUa----------C-CUUGCAGCCGCc -5'
10576 5' -52.4 NC_002687.1 + 248101 0.66 0.999572
Target:  5'- gCCGagCAACGaCuggGGGGCGUuugacuUGGCGGg -3'
miRNA:   3'- -GGCa-GUUGCaGua-CCUUGCA------GCCGCC- -5'
10576 5' -52.4 NC_002687.1 + 249566 0.67 0.998419
Target:  5'- gCCGuguagaUCGAUGagGUccGGGGCGUCGGaCGGa -3'
miRNA:   3'- -GGC------AGUUGCagUA--CCUUGCAGCC-GCC- -5'
10576 5' -52.4 NC_002687.1 + 251498 0.67 0.998884
Target:  5'- aCCGUCAAcCGUCGgcuGACGUCcaGGCuGGu -3'
miRNA:   3'- -GGCAGUU-GCAGUaccUUGCAG--CCG-CC- -5'
10576 5' -52.4 NC_002687.1 + 255410 0.68 0.995317
Target:  5'- gUCGUCAAUGUacUGGAGgGccUCGGCGu -3'
miRNA:   3'- -GGCAGUUGCAguACCUUgC--AGCCGCc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.