miRNA display CGI


Results 1 - 20 of 49 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10576 5' -52.4 NC_002687.1 + 309547 1.13 0.011837
Target:  5'- cCCGUCAACGUCAUGGAACGUCGGCGGu -3'
miRNA:   3'- -GGCAGUUGCAGUACCUUGCAGCCGCC- -5'
10576 5' -52.4 NC_002687.1 + 145388 0.69 0.993833
Target:  5'- --aUCAGCGagGUGGAGaucgaGaUCGGCGGg -3'
miRNA:   3'- ggcAGUUGCagUACCUUg----C-AGCCGCC- -5'
10576 5' -52.4 NC_002687.1 + 69497 0.69 0.991993
Target:  5'- ---cCGACGUgGUGGuugucgucaccGACGUCGGCGa -3'
miRNA:   3'- ggcaGUUGCAgUACC-----------UUGCAGCCGCc -5'
10576 5' -52.4 NC_002687.1 + 226951 0.7 0.989742
Target:  5'- uCCGUCGGCugccgGUgGUGG--UGUCGGUGGc -3'
miRNA:   3'- -GGCAGUUG-----CAgUACCuuGCAGCCGCC- -5'
10576 5' -52.4 NC_002687.1 + 84359 0.7 0.981951
Target:  5'- aCCGUCAACGUCGc--GACGaCGGUGa -3'
miRNA:   3'- -GGCAGUUGCAGUaccUUGCaGCCGCc -5'
10576 5' -52.4 NC_002687.1 + 280918 0.71 0.974048
Target:  5'- gCC-UCAGCGaugCcgGGGgcccguguugaagcaGCGUCGGCGGg -3'
miRNA:   3'- -GGcAGUUGCa--GuaCCU---------------UGCAGCCGCC- -5'
10576 5' -52.4 NC_002687.1 + 169676 0.66 0.999572
Target:  5'- gCCGUUcuUGUgGUGGAcgAUGUCGGaaaaGGu -3'
miRNA:   3'- -GGCAGuuGCAgUACCU--UGCAGCCg---CC- -5'
10576 5' -52.4 NC_002687.1 + 133789 0.66 0.999362
Target:  5'- ---aCGAgGUUGUGGcaAGCGUgGGCGGg -3'
miRNA:   3'- ggcaGUUgCAGUACC--UUGCAgCCGCC- -5'
10576 5' -52.4 NC_002687.1 + 256681 0.68 0.996987
Target:  5'- gUCGgcagCAACGUCAuucacaUGGAACacccCGGUGGa -3'
miRNA:   3'- -GGCa---GUUGCAGU------ACCUUGca--GCCGCC- -5'
10576 5' -52.4 NC_002687.1 + 109020 0.69 0.992961
Target:  5'- gCGUCuuGCGUCu--GAucuUGUCGGCGGa -3'
miRNA:   3'- gGCAGu-UGCAGuacCUu--GCAGCCGCC- -5'
10576 5' -52.4 NC_002687.1 + 95020 0.7 0.981951
Target:  5'- --cUCAAaGUCAUGGGcucaAUGUUGGCGGa -3'
miRNA:   3'- ggcAGUUgCAGUACCU----UGCAGCCGCC- -5'
10576 5' -52.4 NC_002687.1 + 215393 0.74 0.90659
Target:  5'- gCGUgGACGUC-UGGAAacaGUgCGGCGGc -3'
miRNA:   3'- gGCAgUUGCAGuACCUUg--CA-GCCGCC- -5'
10576 5' -52.4 NC_002687.1 + 163996 0.67 0.998669
Target:  5'- uUCGUCggUGUCGaGGucguCGUCGGUa- -3'
miRNA:   3'- -GGCAGuuGCAGUaCCuu--GCAGCCGcc -5'
10576 5' -52.4 NC_002687.1 + 57119 0.73 0.950456
Target:  5'- cCCGUCAACGggAUGcuGCaUCGGCGGc -3'
miRNA:   3'- -GGCAGUUGCagUACcuUGcAGCCGCC- -5'
10576 5' -52.4 NC_002687.1 + 256624 0.69 0.992868
Target:  5'- aUCGUCAACGaCAacgaUGGGgucGCGcucgcgccaauguUCGGCGGg -3'
miRNA:   3'- -GGCAGUUGCaGU----ACCU---UGC-------------AGCCGCC- -5'
10576 5' -52.4 NC_002687.1 + 123705 0.66 0.99907
Target:  5'- cCCG-CAugGUCA----ACGUCGGCaGGu -3'
miRNA:   3'- -GGCaGUugCAGUaccuUGCAGCCG-CC- -5'
10576 5' -52.4 NC_002687.1 + 258254 0.66 0.999572
Target:  5'- aCCGUgGagauucGCGUCAcGGAcagcgGCGUCGGUc- -3'
miRNA:   3'- -GGCAgU------UGCAGUaCCU-----UGCAGCCGcc -5'
10576 5' -52.4 NC_002687.1 + 123081 0.73 0.950456
Target:  5'- aCGUCGACGUCAcGGA-CGggaGGgGGg -3'
miRNA:   3'- gGCAGUUGCAGUaCCUuGCag-CCgCC- -5'
10576 5' -52.4 NC_002687.1 + 55725 0.68 0.99525
Target:  5'- gCGUCucuCGUCGUGGAagAUGUUGagaacauGCGGg -3'
miRNA:   3'- gGCAGuu-GCAGUACCU--UGCAGC-------CGCC- -5'
10576 5' -52.4 NC_002687.1 + 96120 0.68 0.997419
Target:  5'- uUGUCGAcgauCGUCGUGGuguuUGUUGGCGu -3'
miRNA:   3'- gGCAGUU----GCAGUACCuu--GCAGCCGCc -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.