miRNA display CGI


Results 21 - 40 of 49 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10576 5' -52.4 NC_002687.1 + 71678 0.76 0.83827
Target:  5'- gCCGggGGCGUCG-GGAAgGUCGGCGa -3'
miRNA:   3'- -GGCagUUGCAGUaCCUUgCAGCCGCc -5'
10576 5' -52.4 NC_002687.1 + 114987 0.75 0.888156
Target:  5'- cCCGUCGA--UCAcgGGGACGUCGGCu- -3'
miRNA:   3'- -GGCAGUUgcAGUa-CCUUGCAGCCGcc -5'
10576 5' -52.4 NC_002687.1 + 75326 0.75 0.900653
Target:  5'- aCUGUCGACGUgGuauacUGGAAagaUCGGCGGg -3'
miRNA:   3'- -GGCAGUUGCAgU-----ACCUUgc-AGCCGCC- -5'
10576 5' -52.4 NC_002687.1 + 86930 0.74 0.90659
Target:  5'- aCCG-CGAguuuCGUC-UGGAGCGccUCGGCGGg -3'
miRNA:   3'- -GGCaGUU----GCAGuACCUUGC--AGCCGCC- -5'
10576 5' -52.4 NC_002687.1 + 24078 0.73 0.946431
Target:  5'- gCGcCAGCGaugcCGgaGGGGCGUCGGCGGu -3'
miRNA:   3'- gGCaGUUGCa---GUa-CCUUGCAGCCGCC- -5'
10576 5' -52.4 NC_002687.1 + 40416 0.72 0.961301
Target:  5'- cCCGgCGACGcCAUGuccUGUCGGCGGg -3'
miRNA:   3'- -GGCaGUUGCaGUACcuuGCAGCCGCC- -5'
10576 5' -52.4 NC_002687.1 + 248101 0.66 0.999572
Target:  5'- gCCGagCAACGaCuggGGGGCGUuugacuUGGCGGg -3'
miRNA:   3'- -GGCa-GUUGCaGua-CCUUGCA------GCCGCC- -5'
10576 5' -52.4 NC_002687.1 + 74048 0.66 0.999362
Target:  5'- gCCGUCGACcuauGUCucUGcGAGCGcUUGGCGu -3'
miRNA:   3'- -GGCAGUUG----CAGu-AC-CUUGC-AGCCGCc -5'
10576 5' -52.4 NC_002687.1 + 251498 0.67 0.998884
Target:  5'- aCCGUCAAcCGUCGgcuGACGUCcaGGCuGGu -3'
miRNA:   3'- -GGCAGUU-GCAGUaccUUGCAG--CCG-CC- -5'
10576 5' -52.4 NC_002687.1 + 270682 0.67 0.998884
Target:  5'- -gGUUGGCGUCuGUGGAGCGcgCGcGCGu -3'
miRNA:   3'- ggCAGUUGCAG-UACCUUGCa-GC-CGCc -5'
10576 5' -52.4 NC_002687.1 + 157657 0.67 0.998645
Target:  5'- gCUGUUAGCGUUgaGUGcGAAuucauuuCGUCGGCGc -3'
miRNA:   3'- -GGCAGUUGCAG--UAC-CUU-------GCAGCCGCc -5'
10576 5' -52.4 NC_002687.1 + 249566 0.67 0.998419
Target:  5'- gCCGuguagaUCGAUGagGUccGGGGCGUCGGaCGGa -3'
miRNA:   3'- -GGC------AGUUGCagUA--CCUUGCAGCC-GCC- -5'
10576 5' -52.4 NC_002687.1 + 290514 0.67 0.997763
Target:  5'- cCCGaaAACGUCAUGGAGgauCGUCGcaguucgacggaaGUGGc -3'
miRNA:   3'- -GGCagUUGCAGUACCUU---GCAGC-------------CGCC- -5'
10576 5' -52.4 NC_002687.1 + 96120 0.68 0.997419
Target:  5'- uUGUCGAcgauCGUCGUGGuguuUGUUGGCGu -3'
miRNA:   3'- gGCAGUU----GCAGUACCuu--GCAGCCGCc -5'
10576 5' -52.4 NC_002687.1 + 170162 0.69 0.992961
Target:  5'- gUGUCGACGUCG----GCGUCGGCc- -3'
miRNA:   3'- gGCAGUUGCAGUaccuUGCAGCCGcc -5'
10576 5' -52.4 NC_002687.1 + 155024 0.69 0.992961
Target:  5'- aCGaUCGugGUCgAUGGAucuACGgUGGCGGu -3'
miRNA:   3'- gGC-AGUugCAG-UACCU---UGCaGCCGCC- -5'
10576 5' -52.4 NC_002687.1 + 126319 0.7 0.985474
Target:  5'- uCCGUUuuCGUCuucGGACGUUGGCGu -3'
miRNA:   3'- -GGCAGuuGCAGuacCUUGCAGCCGCc -5'
10576 5' -52.4 NC_002687.1 + 328273 0.71 0.977822
Target:  5'- aCGguggcaggCAGCGUUgGUGGAcaACGUCGGCGa -3'
miRNA:   3'- gGCa-------GUUGCAG-UACCU--UGCAGCCGCc -5'
10576 5' -52.4 NC_002687.1 + 84722 0.71 0.973035
Target:  5'- uCCGUCAcCGUCGUcGcGACGUugacgguugCGGCGGa -3'
miRNA:   3'- -GGCAGUuGCAGUA-CcUUGCA---------GCCGCC- -5'
10576 5' -52.4 NC_002687.1 + 182913 0.72 0.967543
Target:  5'- uCCGgCAugGcCGUGGGACGgUGGCGa -3'
miRNA:   3'- -GGCaGUugCaGUACCUUGCaGCCGCc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.