miRNA display CGI


Results 21 - 40 of 49 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10576 5' -52.4 NC_002687.1 + 248101 0.66 0.999572
Target:  5'- gCCGagCAACGaCuggGGGGCGUuugacuUGGCGGg -3'
miRNA:   3'- -GGCa-GUUGCaGua-CCUUGCA------GCCGCC- -5'
10576 5' -52.4 NC_002687.1 + 46910 0.66 0.999476
Target:  5'- gCGUUGAUGUCuUGGGugcAUGUCGGaGGc -3'
miRNA:   3'- gGCAGUUGCAGuACCU---UGCAGCCgCC- -5'
10576 5' -52.4 NC_002687.1 + 74048 0.66 0.999362
Target:  5'- gCCGUCGACcuauGUCucUGcGAGCGcUUGGCGu -3'
miRNA:   3'- -GGCAGUUG----CAGu-AC-CUUGC-AGCCGCc -5'
10576 5' -52.4 NC_002687.1 + 225216 0.66 0.999362
Target:  5'- aCCGUgcCGGCGcCGcc--GCGUCGGCGGc -3'
miRNA:   3'- -GGCA--GUUGCaGUaccuUGCAGCCGCC- -5'
10576 5' -52.4 NC_002687.1 + 290514 0.67 0.997763
Target:  5'- cCCGaaAACGUCAUGGAGgauCGUCGcaguucgacggaaGUGGc -3'
miRNA:   3'- -GGCagUUGCAGUACCUU---GCAGC-------------CGCC- -5'
10576 5' -52.4 NC_002687.1 + 249566 0.67 0.998419
Target:  5'- gCCGuguagaUCGAUGagGUccGGGGCGUCGGaCGGa -3'
miRNA:   3'- -GGC------AGUUGCagUA--CCUUGCAGCC-GCC- -5'
10576 5' -52.4 NC_002687.1 + 157657 0.67 0.998645
Target:  5'- gCUGUUAGCGUUgaGUGcGAAuucauuuCGUCGGCGc -3'
miRNA:   3'- -GGCAGUUGCAG--UAC-CUU-------GCAGCCGCc -5'
10576 5' -52.4 NC_002687.1 + 270682 0.67 0.998884
Target:  5'- -gGUUGGCGUCuGUGGAGCGcgCGcGCGu -3'
miRNA:   3'- ggCAGUUGCAG-UACCUUGCa-GC-CGCc -5'
10576 5' -52.4 NC_002687.1 + 251498 0.67 0.998884
Target:  5'- aCCGUCAAcCGUCGgcuGACGUCcaGGCuGGu -3'
miRNA:   3'- -GGCAGUU-GCAGUaccUUGCAG--CCG-CC- -5'
10576 5' -52.4 NC_002687.1 + 297347 0.66 0.999362
Target:  5'- aCCGagGACGcgcgCgAUGG--UGUCGGCGGa -3'
miRNA:   3'- -GGCagUUGCa---G-UACCuuGCAGCCGCC- -5'
10576 5' -52.4 NC_002687.1 + 256624 0.69 0.992868
Target:  5'- aUCGUCAACGaCAacgaUGGGgucGCGcucgcgccaauguUCGGCGGg -3'
miRNA:   3'- -GGCAGUUGCaGU----ACCU---UGC-------------AGCCGCC- -5'
10576 5' -52.4 NC_002687.1 + 69497 0.69 0.991993
Target:  5'- ---cCGACGUgGUGGuugucgucaccGACGUCGGCGa -3'
miRNA:   3'- ggcaGUUGCAgUACC-----------UUGCAGCCGCc -5'
10576 5' -52.4 NC_002687.1 + 226951 0.7 0.989742
Target:  5'- uCCGUCGGCugccgGUgGUGG--UGUCGGUGGc -3'
miRNA:   3'- -GGCAGUUG-----CAgUACCuuGCAGCCGCC- -5'
10576 5' -52.4 NC_002687.1 + 95020 0.7 0.981951
Target:  5'- --cUCAAaGUCAUGGGcucaAUGUUGGCGGa -3'
miRNA:   3'- ggcAGUUgCAGUACCU----UGCAGCCGCC- -5'
10576 5' -52.4 NC_002687.1 + 84359 0.7 0.981951
Target:  5'- aCCGUCAACGUCGc--GACGaCGGUGa -3'
miRNA:   3'- -GGCAGUUGCAGUaccUUGCaGCCGCc -5'
10576 5' -52.4 NC_002687.1 + 280918 0.71 0.974048
Target:  5'- gCC-UCAGCGaugCcgGGGgcccguguugaagcaGCGUCGGCGGg -3'
miRNA:   3'- -GGcAGUUGCa--GuaCCU---------------UGCAGCCGCC- -5'
10576 5' -52.4 NC_002687.1 + 123081 0.73 0.950456
Target:  5'- aCGUCGACGUCAcGGA-CGggaGGgGGg -3'
miRNA:   3'- gGCAGUUGCAGUaCCUuGCag-CCgCC- -5'
10576 5' -52.4 NC_002687.1 + 57119 0.73 0.950456
Target:  5'- cCCGUCAACGggAUGcuGCaUCGGCGGc -3'
miRNA:   3'- -GGCAGUUGCagUACcuUGcAGCCGCC- -5'
10576 5' -52.4 NC_002687.1 + 215393 0.74 0.90659
Target:  5'- gCGUgGACGUC-UGGAAacaGUgCGGCGGc -3'
miRNA:   3'- gGCAgUUGCAGuACCUUg--CA-GCCGCC- -5'
10576 5' -52.4 NC_002687.1 + 258254 0.66 0.999572
Target:  5'- aCCGUgGagauucGCGUCAcGGAcagcgGCGUCGGUc- -3'
miRNA:   3'- -GGCAgU------UGCAGUaCCU-----UGCAGCCGcc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.