miRNA display CGI


Results 1 - 20 of 25 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10577 3' -48.9 NC_002687.1 + 121176 0.66 0.999974
Target:  5'- aGAGCUGCAUGG--UugGGUUUugaaAGGAc -3'
miRNA:   3'- aUUCGACGUGCUuuAugCUAGG----UCCU- -5'
10577 3' -48.9 NC_002687.1 + 171714 0.66 0.999974
Target:  5'- gGAGCUGgACGAcgAGUACGAaUCGGa- -3'
miRNA:   3'- aUUCGACgUGCU--UUAUGCUaGGUCcu -5'
10577 3' -48.9 NC_002687.1 + 235189 0.66 0.999974
Target:  5'- aAGGCUGcCGCGAAAcuCGAa-CAGGAu -3'
miRNA:   3'- aUUCGAC-GUGCUUUauGCUagGUCCU- -5'
10577 3' -48.9 NC_002687.1 + 210200 0.66 0.999966
Target:  5'- --uGCUGCACGuAGUGCuGAg-CAGGGu -3'
miRNA:   3'- auuCGACGUGCuUUAUG-CUagGUCCU- -5'
10577 3' -48.9 NC_002687.1 + 301047 0.66 0.999954
Target:  5'- -cAGCUGUugucauggaGAGAUuCGGUCCAGGu -3'
miRNA:   3'- auUCGACGug-------CUUUAuGCUAGGUCCu -5'
10577 3' -48.9 NC_002687.1 + 215034 0.66 0.999921
Target:  5'- uUGAGCUGU-CGGAGgaaGCGGUCuggaCAGGAu -3'
miRNA:   3'- -AUUCGACGuGCUUUa--UGCUAG----GUCCU- -5'
10577 3' -48.9 NC_002687.1 + 146658 0.66 0.999921
Target:  5'- cGAGCUGCACGugGU-CGAUgCGGc- -3'
miRNA:   3'- aUUCGACGUGCuuUAuGCUAgGUCcu -5'
10577 3' -48.9 NC_002687.1 + 224701 0.66 0.999921
Target:  5'- aGGGUUGCcaagauGCGGGAUggcACGGUCCAGa- -3'
miRNA:   3'- aUUCGACG------UGCUUUA---UGCUAGGUCcu -5'
10577 3' -48.9 NC_002687.1 + 73199 0.67 0.999897
Target:  5'- aGAuaUGCGCGAGggACGAUCUcaauaucaAGGAg -3'
miRNA:   3'- aUUcgACGUGCUUuaUGCUAGG--------UCCU- -5'
10577 3' -48.9 NC_002687.1 + 307400 0.67 0.999897
Target:  5'- cAAGcCUGCugGGAcugGUACGAUCgCGGa- -3'
miRNA:   3'- aUUC-GACGugCUU---UAUGCUAG-GUCcu -5'
10577 3' -48.9 NC_002687.1 + 211880 0.67 0.999897
Target:  5'- aGGGCaaggGCAuCGAGucGUACGAUCUGGGc -3'
miRNA:   3'- aUUCGa---CGU-GCUU--UAUGCUAGGUCCu -5'
10577 3' -48.9 NC_002687.1 + 135684 0.67 0.999727
Target:  5'- cGGGCUG-AUGGAcgA-GAUCCAGGAc -3'
miRNA:   3'- aUUCGACgUGCUUuaUgCUAGGUCCU- -5'
10577 3' -48.9 NC_002687.1 + 42582 0.68 0.999657
Target:  5'- aGGGUUGUugaucgcacACGgcAUGgGAUCCGGGAa -3'
miRNA:   3'- aUUCGACG---------UGCuuUAUgCUAGGUCCU- -5'
10577 3' -48.9 NC_002687.1 + 202501 0.68 0.999398
Target:  5'- cGAGCUGUACGAuAUgaACGGcgccaacaucgcucuUCUAGGGa -3'
miRNA:   3'- aUUCGACGUGCUuUA--UGCU---------------AGGUCCU- -5'
10577 3' -48.9 NC_002687.1 + 199589 0.68 0.999199
Target:  5'- cGAGCUcugGCGCGAAacGUAUGugccuucuuUCCAGGGa -3'
miRNA:   3'- aUUCGA---CGUGCUU--UAUGCu--------AGGUCCU- -5'
10577 3' -48.9 NC_002687.1 + 238251 0.69 0.999023
Target:  5'- --cGCUGCACGGucgcAUGAUCCuGGu -3'
miRNA:   3'- auuCGACGUGCUuua-UGCUAGGuCCu -5'
10577 3' -48.9 NC_002687.1 + 241608 0.7 0.997574
Target:  5'- gGAGCagGCcaaGAAGUACGAUCCuAGGu -3'
miRNA:   3'- aUUCGa-CGug-CUUUAUGCUAGG-UCCu -5'
10577 3' -48.9 NC_002687.1 + 44902 0.7 0.997532
Target:  5'- --uGCUGCAUcccaccgGAGAUGCGAUggaaCAGGAg -3'
miRNA:   3'- auuCGACGUG-------CUUUAUGCUAg---GUCCU- -5'
10577 3' -48.9 NC_002687.1 + 49171 0.7 0.996049
Target:  5'- ---aCUGCACGAucaaGAUugGAUCCAGu- -3'
miRNA:   3'- auucGACGUGCU----UUAugCUAGGUCcu -5'
10577 3' -48.9 NC_002687.1 + 99726 0.7 0.996049
Target:  5'- -cAGCUGCACGAGcgucuCGGUuucuugcaCCAGGAc -3'
miRNA:   3'- auUCGACGUGCUUuau--GCUA--------GGUCCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.