miRNA display CGI


Results 1 - 12 of 12 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10577 5' -54.8 NC_002687.1 + 76644 0.67 0.9824
Target:  5'- aCGUUUCUCucCUUGaCGUCUUGcGCGAa -3'
miRNA:   3'- -GCAGAGAGc-GAAC-GCAGAGCaCGCUg -5'
10577 5' -54.8 NC_002687.1 + 246490 0.68 0.976022
Target:  5'- uCGUCUUUUGUc-GCGUaugUCGUGUGGCg -3'
miRNA:   3'- -GCAGAGAGCGaaCGCAg--AGCACGCUG- -5'
10577 5' -54.8 NC_002687.1 + 97320 0.68 0.970921
Target:  5'- uGUUUCUCGCUUGUaaugggaacaGUgCUCGcgGCGAa -3'
miRNA:   3'- gCAGAGAGCGAACG----------CA-GAGCa-CGCUg -5'
10577 5' -54.8 NC_002687.1 + 95170 0.68 0.965085
Target:  5'- cCGUCUCUCGacacgUGUGUgCUC--GCGACg -3'
miRNA:   3'- -GCAGAGAGCga---ACGCA-GAGcaCGCUG- -5'
10577 5' -54.8 NC_002687.1 + 266128 0.68 0.961877
Target:  5'- --cUUCUCGCUggagagGCGUCUCcUGUGAUu -3'
miRNA:   3'- gcaGAGAGCGAa-----CGCAGAGcACGCUG- -5'
10577 5' -54.8 NC_002687.1 + 237471 0.68 0.961877
Target:  5'- uCGUC-CUCGaguUUGCGUCcgUCGUGCGu- -3'
miRNA:   3'- -GCAGaGAGCg--AACGCAG--AGCACGCug -5'
10577 5' -54.8 NC_002687.1 + 123581 0.69 0.951047
Target:  5'- -aUCUUgagCGCgaGCGUCgCGUGUGGCg -3'
miRNA:   3'- gcAGAGa--GCGaaCGCAGaGCACGCUG- -5'
10577 5' -54.8 NC_002687.1 + 76081 0.69 0.947021
Target:  5'- cCGUUUC-CGC-UGUGUCgUGUGUGACa -3'
miRNA:   3'- -GCAGAGaGCGaACGCAGaGCACGCUG- -5'
10577 5' -54.8 NC_002687.1 + 181820 0.71 0.888525
Target:  5'- ---gUUUCGCacgGUGUCUUGUGCGACu -3'
miRNA:   3'- gcagAGAGCGaa-CGCAGAGCACGCUG- -5'
10577 5' -54.8 NC_002687.1 + 315086 0.72 0.838289
Target:  5'- uGUCUUUCGCuUUGCGUCuuUCGgccucUGCGAUu -3'
miRNA:   3'- gCAGAGAGCG-AACGCAG--AGC-----ACGCUG- -5'
10577 5' -54.8 NC_002687.1 + 145233 0.73 0.797193
Target:  5'- aCGUgUCUCGCUacgGCGacCUCGUgaGCGACg -3'
miRNA:   3'- -GCAgAGAGCGAa--CGCa-GAGCA--CGCUG- -5'
10577 5' -54.8 NC_002687.1 + 310668 1.1 0.007265
Target:  5'- gCGUCUCUCGCUUGCGUCUCGUGCGACa -3'
miRNA:   3'- -GCAGAGAGCGAACGCAGAGCACGCUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.