Results 21 - 31 of 31 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
10578 | 3' | -58.1 | NC_002687.1 | + | 295128 | 0.71 | 0.749661 |
Target: 5'- uCGGCGGaUUGCUugcggaacucgcgaGcGGCGCGCGCGCGg -3' miRNA: 3'- cGCCGUC-GACGA--------------CaCUGCGUGUGCGC- -5' |
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10578 | 3' | -58.1 | NC_002687.1 | + | 297325 | 0.7 | 0.812929 |
Target: 5'- uCGGCGGaCUGCUugcggaacucgcGUGcgGCGCGCGCGgGg -3' miRNA: 3'- cGCCGUC-GACGA------------CAC--UGCGUGUGCgC- -5' |
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10578 | 3' | -58.1 | NC_002687.1 | + | 307615 | 0.66 | 0.936399 |
Target: 5'- gGCGGCGGCggUGCUG-GugGUGgAgGCc -3' miRNA: 3'- -CGCCGUCG--ACGACaCugCGUgUgCGc -5' |
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10578 | 3' | -58.1 | NC_002687.1 | + | 307645 | 0.7 | 0.804657 |
Target: 5'- gGCGGCGGUgGCgGUgGugGUGCugGCa -3' miRNA: 3'- -CGCCGUCGaCGaCA-CugCGUGugCGc -5' |
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10578 | 3' | -58.1 | NC_002687.1 | + | 310934 | 0.7 | 0.796246 |
Target: 5'- aCGGCGGUUGC---GGCGCGcCACGCa -3' miRNA: 3'- cGCCGUCGACGacaCUGCGU-GUGCGc -5' |
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10578 | 3' | -58.1 | NC_002687.1 | + | 311308 | 0.67 | 0.921702 |
Target: 5'- cGCGGCcauuucGCcgUGC-GUGGCGCGC-CGCa -3' miRNA: 3'- -CGCCGu-----CG--ACGaCACUGCGUGuGCGc -5' |
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10578 | 3' | -58.1 | NC_002687.1 | + | 311744 | 1.11 | 0.002909 |
Target: 5'- cGCGGCAGCUGCUGUGACGCACACGCGg -3' miRNA: 3'- -CGCCGUCGACGACACUGCGUGUGCGC- -5' |
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10578 | 3' | -58.1 | NC_002687.1 | + | 330584 | 0.67 | 0.921702 |
Target: 5'- cCGGCAGCcGUcGUGGCGauuCACGUa -3' miRNA: 3'- cGCCGUCGaCGaCACUGCgu-GUGCGc -5' |
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10578 | 3' | -58.1 | NC_002687.1 | + | 331220 | 0.69 | 0.836849 |
Target: 5'- aGCGaGCGGgcCUGCUGUGGCGUcaGCGUu -3' miRNA: 3'- -CGC-CGUC--GACGACACUGCGugUGCGc -5' |
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10578 | 3' | -58.1 | NC_002687.1 | + | 331950 | 0.74 | 0.581785 |
Target: 5'- aCGGUAGcCUGCUGUGcACGCcuacuCGCGCu -3' miRNA: 3'- cGCCGUC-GACGACAC-UGCGu----GUGCGc -5' |
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10578 | 3' | -58.1 | NC_002687.1 | + | 332260 | 0.67 | 0.921702 |
Target: 5'- uGCGGCGGCgGCgcuugGGCGUGgAgGCGa -3' miRNA: 3'- -CGCCGUCGaCGaca--CUGCGUgUgCGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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