Results 1 - 20 of 31 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
10578 | 3' | -58.1 | NC_002687.1 | + | 65106 | 0.71 | 0.715553 |
Target: 5'- uGUGGCAgGCUGCuuuugUGUGuACGCACuCGUGu -3' miRNA: 3'- -CGCCGU-CGACG-----ACAC-UGCGUGuGCGC- -5' |
|||||||
10578 | 3' | -58.1 | NC_002687.1 | + | 224134 | 0.76 | 0.471095 |
Target: 5'- cGCuGGCGGUgGCgGUGGCGCugGCGCu -3' miRNA: 3'- -CG-CCGUCGaCGaCACUGCGugUGCGc -5' |
|||||||
10578 | 3' | -58.1 | NC_002687.1 | + | 201852 | 0.76 | 0.445054 |
Target: 5'- aGCGGCGGCUugGCacaGUGGCuCACGCGCGc -3' miRNA: 3'- -CGCCGUCGA--CGa--CACUGcGUGUGCGC- -5' |
|||||||
10578 | 3' | -58.1 | NC_002687.1 | + | 275957 | 0.8 | 0.307731 |
Target: 5'- uGCGGCAGCUGCUGaugcaagugGACGCGguuCAUGCu -3' miRNA: 3'- -CGCCGUCGACGACa--------CUGCGU---GUGCGc -5' |
|||||||
10578 | 3' | -58.1 | NC_002687.1 | + | 311744 | 1.11 | 0.002909 |
Target: 5'- cGCGGCAGCUGCUGUGACGCACACGCGg -3' miRNA: 3'- -CGCCGUCGACGACACUGCGUGUGCGC- -5' |
|||||||
10578 | 3' | -58.1 | NC_002687.1 | + | 199985 | 0.69 | 0.829032 |
Target: 5'- aGUGGuCAGCUcGUgGUGAgCGCACugGUGu -3' miRNA: 3'- -CGCC-GUCGA-CGaCACU-GCGUGugCGC- -5' |
|||||||
10578 | 3' | -58.1 | NC_002687.1 | + | 200938 | 0.66 | 0.949207 |
Target: 5'- aGgGGCGGCUugGCacaGUGGCuCAUGCGCGc -3' miRNA: 3'- -CgCCGUCGA--CGa--CACUGcGUGUGCGC- -5' |
|||||||
10578 | 3' | -58.1 | NC_002687.1 | + | 294724 | 0.67 | 0.925302 |
Target: 5'- aCGGCcaccgagaucauuuGGCUGCUccccGCGCGCGCGCc -3' miRNA: 3'- cGCCG--------------UCGACGAcac-UGCGUGUGCGc -5' |
|||||||
10578 | 3' | -58.1 | NC_002687.1 | + | 12201 | 0.67 | 0.910285 |
Target: 5'- aGCGGUAGCaGCUGUGGaacgagcCGUAacaGCgGCGg -3' miRNA: 3'- -CGCCGUCGaCGACACU-------GCGUg--UG-CGC- -5' |
|||||||
10578 | 3' | -58.1 | NC_002687.1 | + | 238795 | 0.7 | 0.812929 |
Target: 5'- uGUGGC-GUUGUUGUGGCGUgaaagggaugGCAUGCa -3' miRNA: 3'- -CGCCGuCGACGACACUGCG----------UGUGCGc -5' |
|||||||
10578 | 3' | -58.1 | NC_002687.1 | + | 181544 | 0.71 | 0.724872 |
Target: 5'- aGUGGCaugGGCUGCUGccuUGAUGCGCGC-Ca -3' miRNA: 3'- -CGCCG---UCGACGAC---ACUGCGUGUGcGc -5' |
|||||||
10578 | 3' | -58.1 | NC_002687.1 | + | 117876 | 0.66 | 0.953063 |
Target: 5'- cGCaGGC-GCUGCaccGUcguccucguucGACGCAgGCGCGg -3' miRNA: 3'- -CG-CCGuCGACGa--CA-----------CUGCGUgUGCGC- -5' |
|||||||
10578 | 3' | -58.1 | NC_002687.1 | + | 310934 | 0.7 | 0.796246 |
Target: 5'- aCGGCGGUUGC---GGCGCGcCACGCa -3' miRNA: 3'- cGCCGUCGACGacaCUGCGU-GUGCGc -5' |
|||||||
10578 | 3' | -58.1 | NC_002687.1 | + | 330584 | 0.67 | 0.921702 |
Target: 5'- cCGGCAGCcGUcGUGGCGauuCACGUa -3' miRNA: 3'- cGCCGUCGaCGaCACUGCgu-GUGCGc -5' |
|||||||
10578 | 3' | -58.1 | NC_002687.1 | + | 331950 | 0.74 | 0.581785 |
Target: 5'- aCGGUAGcCUGCUGUGcACGCcuacuCGCGCu -3' miRNA: 3'- cGCCGUC-GACGACAC-UGCGu----GUGCGc -5' |
|||||||
10578 | 3' | -58.1 | NC_002687.1 | + | 292789 | 0.74 | 0.581785 |
Target: 5'- aGCGGUGGCgGCcGcGGCGCACGgGCGa -3' miRNA: 3'- -CGCCGUCGaCGaCaCUGCGUGUgCGC- -5' |
|||||||
10578 | 3' | -58.1 | NC_002687.1 | + | 295128 | 0.71 | 0.749661 |
Target: 5'- uCGGCGGaUUGCUugcggaacucgcgaGcGGCGCGCGCGCGg -3' miRNA: 3'- cGCCGUC-GACGA--------------CaCUGCGUGUGCGC- -5' |
|||||||
10578 | 3' | -58.1 | NC_002687.1 | + | 230384 | 0.71 | 0.752377 |
Target: 5'- -aGGU-GCUGCUGUGuCGCACACuaagucguguuGCGa -3' miRNA: 3'- cgCCGuCGACGACACuGCGUGUG-----------CGC- -5' |
|||||||
10578 | 3' | -58.1 | NC_002687.1 | + | 13317 | 0.7 | 0.787705 |
Target: 5'- cCGGC-GCUGCUGUGAucggcUGCGCuccUGCGa -3' miRNA: 3'- cGCCGuCGACGACACU-----GCGUGu--GCGC- -5' |
|||||||
10578 | 3' | -58.1 | NC_002687.1 | + | 274423 | 0.69 | 0.851984 |
Target: 5'- cGUGGCGGUUGUUcUGACGCACGg--- -3' miRNA: 3'- -CGCCGUCGACGAcACUGCGUGUgcgc -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home