Results 21 - 31 of 31 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
10578 | 3' | -58.1 | NC_002687.1 | + | 230384 | 0.71 | 0.752377 |
Target: 5'- -aGGU-GCUGCUGUGuCGCACACuaagucguguuGCGa -3' miRNA: 3'- cgCCGuCGACGACACuGCGUGUG-----------CGC- -5' |
|||||||
10578 | 3' | -58.1 | NC_002687.1 | + | 295128 | 0.71 | 0.749661 |
Target: 5'- uCGGCGGaUUGCUugcggaacucgcgaGcGGCGCGCGCGCGg -3' miRNA: 3'- cGCCGUC-GACGA--------------CaCUGCGUGUGCGC- -5' |
|||||||
10578 | 3' | -58.1 | NC_002687.1 | + | 181544 | 0.71 | 0.724872 |
Target: 5'- aGUGGCaugGGCUGCUGccuUGAUGCGCGC-Ca -3' miRNA: 3'- -CGCCG---UCGACGAC---ACUGCGUGUGcGc -5' |
|||||||
10578 | 3' | -58.1 | NC_002687.1 | + | 65106 | 0.71 | 0.715553 |
Target: 5'- uGUGGCAgGCUGCuuuugUGUGuACGCACuCGUGu -3' miRNA: 3'- -CGCCGU-CGACG-----ACAC-UGCGUGuGCGC- -5' |
|||||||
10578 | 3' | -58.1 | NC_002687.1 | + | 331950 | 0.74 | 0.581785 |
Target: 5'- aCGGUAGcCUGCUGUGcACGCcuacuCGCGCu -3' miRNA: 3'- cGCCGUC-GACGACAC-UGCGu----GUGCGc -5' |
|||||||
10578 | 3' | -58.1 | NC_002687.1 | + | 292789 | 0.74 | 0.581785 |
Target: 5'- aGCGGUGGCgGCcGcGGCGCACGgGCGa -3' miRNA: 3'- -CGCCGUCGaCGaCaCUGCGUGUgCGC- -5' |
|||||||
10578 | 3' | -58.1 | NC_002687.1 | + | 138336 | 0.76 | 0.479947 |
Target: 5'- cGCGGCuGCUGCUGUGGagagGC-CGCGuCGg -3' miRNA: 3'- -CGCCGuCGACGACACUg---CGuGUGC-GC- -5' |
|||||||
10578 | 3' | -58.1 | NC_002687.1 | + | 224134 | 0.76 | 0.471095 |
Target: 5'- cGCuGGCGGUgGCgGUGGCGCugGCGCu -3' miRNA: 3'- -CG-CCGUCGaCGaCACUGCGugUGCGc -5' |
|||||||
10578 | 3' | -58.1 | NC_002687.1 | + | 201852 | 0.76 | 0.445054 |
Target: 5'- aGCGGCGGCUugGCacaGUGGCuCACGCGCGc -3' miRNA: 3'- -CGCCGUCGA--CGa--CACUGcGUGUGCGC- -5' |
|||||||
10578 | 3' | -58.1 | NC_002687.1 | + | 275957 | 0.8 | 0.307731 |
Target: 5'- uGCGGCAGCUGCUGaugcaagugGACGCGguuCAUGCu -3' miRNA: 3'- -CGCCGUCGACGACa--------CUGCGU---GUGCGc -5' |
|||||||
10578 | 3' | -58.1 | NC_002687.1 | + | 311744 | 1.11 | 0.002909 |
Target: 5'- cGCGGCAGCUGCUGUGACGCACACGCGg -3' miRNA: 3'- -CGCCGUCGACGACACUGCGUGUGCGC- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home