miRNA display CGI


Results 1 - 20 of 51 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10578 5' -50.8 NC_002687.1 + 26409 0.66 0.999787
Target:  5'- cCGgGCuCGCGUCUGACauaGCAGugAu -3'
miRNA:   3'- -GCgUGuGUGCAGAUUGgugUGUCugU- -5'
10578 5' -50.8 NC_002687.1 + 60494 0.66 0.999787
Target:  5'- gCGCACGCAuCGccagCUGGCCG-ACAGAg- -3'
miRNA:   3'- -GCGUGUGU-GCa---GAUUGGUgUGUCUgu -5'
10578 5' -50.8 NC_002687.1 + 237110 0.66 0.999732
Target:  5'- aCGCACGCuuucUCUAACCcCGCGGuCGg -3'
miRNA:   3'- -GCGUGUGugc-AGAUUGGuGUGUCuGU- -5'
10578 5' -50.8 NC_002687.1 + 40652 0.66 0.999666
Target:  5'- aCGCAuUugGCGUUUGGCgacucUACAUAGACGc -3'
miRNA:   3'- -GCGU-GugUGCAGAUUG-----GUGUGUCUGU- -5'
10578 5' -50.8 NC_002687.1 + 259215 0.66 0.999666
Target:  5'- uGaCAUcCAUGUCgcGCCACGgAGACAu -3'
miRNA:   3'- gC-GUGuGUGCAGauUGGUGUgUCUGU- -5'
10578 5' -50.8 NC_002687.1 + 98534 0.66 0.999666
Target:  5'- gGUAagaccaAgGCGUCU-GCCACGCAGAUu -3'
miRNA:   3'- gCGUg-----UgUGCAGAuUGGUGUGUCUGu -5'
10578 5' -50.8 NC_002687.1 + 200346 0.66 0.999666
Target:  5'- aCGUGCugGCGgc-AGCCuuCGCAGACGu -3'
miRNA:   3'- -GCGUGugUGCagaUUGGu-GUGUCUGU- -5'
10578 5' -50.8 NC_002687.1 + 293253 0.66 0.999635
Target:  5'- aGCACGCAUGgaacaggggugagCUGGCUGCACGuGCGg -3'
miRNA:   3'- gCGUGUGUGCa------------GAUUGGUGUGUcUGU- -5'
10578 5' -50.8 NC_002687.1 + 334252 0.66 0.999585
Target:  5'- gGCAauu-UGUCUGGCUACACAGcCAg -3'
miRNA:   3'- gCGUguguGCAGAUUGGUGUGUCuGU- -5'
10578 5' -50.8 NC_002687.1 + 1666 0.66 0.999585
Target:  5'- gGCAauu-UGUCUGGCUACACAGcCAg -3'
miRNA:   3'- gCGUguguGCAGAUUGGUGUGUCuGU- -5'
10578 5' -50.8 NC_002687.1 + 1140 0.66 0.999585
Target:  5'- gGCAauu-UGUCUGGCUACACAGcCAg -3'
miRNA:   3'- gCGUguguGCAGAUUGGUGUGUCuGU- -5'
10578 5' -50.8 NC_002687.1 + 613 0.66 0.999585
Target:  5'- gGCAauu-UGUCUGGCUACACAGcCAg -3'
miRNA:   3'- gCGUguguGCAGAUUGGUGUGUCuGU- -5'
10578 5' -50.8 NC_002687.1 + 334814 0.66 0.999585
Target:  5'- gGCAauu-UGUCUGGCUACACAGcCAg -3'
miRNA:   3'- gCGUguguGCAGAUUGGUGUGUCuGU- -5'
10578 5' -50.8 NC_002687.1 + 72788 0.66 0.999585
Target:  5'- uGgGCuCGCGUC--GCCACagACAGACAu -3'
miRNA:   3'- gCgUGuGUGCAGauUGGUG--UGUCUGU- -5'
10578 5' -50.8 NC_002687.1 + 201222 0.66 0.999585
Target:  5'- gGCGC-CACGcUCUAuccuGCgGgGCAGACAg -3'
miRNA:   3'- gCGUGuGUGC-AGAU----UGgUgUGUCUGU- -5'
10578 5' -50.8 NC_002687.1 + 67904 0.67 0.999371
Target:  5'- aCGCGCGCA--UCUGGCCGUACAaGCAu -3'
miRNA:   3'- -GCGUGUGUgcAGAUUGGUGUGUcUGU- -5'
10578 5' -50.8 NC_002687.1 + 52807 0.67 0.999233
Target:  5'- uGCACACcCGUUUGuCCACuuGCAGcACGa -3'
miRNA:   3'- gCGUGUGuGCAGAUuGGUG--UGUC-UGU- -5'
10578 5' -50.8 NC_002687.1 + 88930 0.67 0.999233
Target:  5'- gCGCGCugGCG-CgGGCCGCgaguucggcgGCAGACu -3'
miRNA:   3'- -GCGUGugUGCaGaUUGGUG----------UGUCUGu -5'
10578 5' -50.8 NC_002687.1 + 269901 0.67 0.999233
Target:  5'- gGCAaCACGgGUCgaacAGCCACGCcuuGGCAc -3'
miRNA:   3'- gCGU-GUGUgCAGa---UUGGUGUGu--CUGU- -5'
10578 5' -50.8 NC_002687.1 + 290956 0.67 0.999068
Target:  5'- uGCACAgcagcaGCGcaUGACaCACGCAGACAa -3'
miRNA:   3'- gCGUGUg-----UGCagAUUG-GUGUGUCUGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.