Results 1 - 20 of 29 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
10579 | 3' | -59.9 | NC_002687.1 | + | 5546 | 0.7 | 0.737499 |
Target: 5'- gACCGCUGCGAgacaugagUCUUGCugUCAGCGGAu -3' miRNA: 3'- -UGGCGGCGCUga------GGGACG--AGUUGCCU- -5' |
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10579 | 3' | -59.9 | NC_002687.1 | + | 6370 | 0.74 | 0.504822 |
Target: 5'- gACCGCUGCGAgacaugagCCUUGCugUCAGCGGAu -3' miRNA: 3'- -UGGCGGCGCUga------GGGACG--AGUUGCCU- -5' |
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10579 | 3' | -59.9 | NC_002687.1 | + | 9017 | 0.69 | 0.761587 |
Target: 5'- cCCGCUGCGGgcauguggauuauuCUCCCUGUUCccccCGGGa -3' miRNA: 3'- uGGCGGCGCU--------------GAGGGACGAGuu--GCCU- -5' |
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10579 | 3' | -59.9 | NC_002687.1 | + | 11857 | 0.69 | 0.772938 |
Target: 5'- aGCCGCCGCuGCUacgaccgcuacCCCUGCUaCAACa-- -3' miRNA: 3'- -UGGCGGCGcUGA-----------GGGACGA-GUUGccu -5' |
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10579 | 3' | -59.9 | NC_002687.1 | + | 12530 | 0.69 | 0.772938 |
Target: 5'- uGCCGCUGCuGCUCCUucUGCcgaGAUGGAg -3' miRNA: 3'- -UGGCGGCGcUGAGGG--ACGag-UUGCCU- -5' |
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10579 | 3' | -59.9 | NC_002687.1 | + | 18119 | 0.67 | 0.880644 |
Target: 5'- aGCCGCUGCGGCUgCaacGCUUAGCa-- -3' miRNA: 3'- -UGGCGGCGCUGAgGga-CGAGUUGccu -5' |
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10579 | 3' | -59.9 | NC_002687.1 | + | 18584 | 0.66 | 0.910861 |
Target: 5'- cGCCgguGCUGCGACggugucgUCCUGCUguguugaAACGGAa -3' miRNA: 3'- -UGG---CGGCGCUGa------GGGACGAg------UUGCCU- -5' |
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10579 | 3' | -59.9 | NC_002687.1 | + | 19967 | 0.69 | 0.746495 |
Target: 5'- cACUGCgGUG-CUaCCCauuUGCUCAACGGGg -3' miRNA: 3'- -UGGCGgCGCuGA-GGG---ACGAGUUGCCU- -5' |
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10579 | 3' | -59.9 | NC_002687.1 | + | 60250 | 0.67 | 0.87402 |
Target: 5'- uUUGCCGCGACauccugcgacgaUCCCU-CUCAGCGa- -3' miRNA: 3'- uGGCGGCGCUG------------AGGGAcGAGUUGCcu -5' |
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10579 | 3' | -59.9 | NC_002687.1 | + | 66620 | 0.68 | 0.814766 |
Target: 5'- gACCGCCaUGGCccCCCUGUaCGACGGu -3' miRNA: 3'- -UGGCGGcGCUGa-GGGACGaGUUGCCu -5' |
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10579 | 3' | -59.9 | NC_002687.1 | + | 71951 | 0.7 | 0.71007 |
Target: 5'- cGCCGCCGgaGAUUCUCucgUGCUUGACGGc -3' miRNA: 3'- -UGGCGGCg-CUGAGGG---ACGAGUUGCCu -5' |
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10579 | 3' | -59.9 | NC_002687.1 | + | 79922 | 0.7 | 0.737499 |
Target: 5'- cGCUaCCG-GAgUCCCUGCUgAACGGGa -3' miRNA: 3'- -UGGcGGCgCUgAGGGACGAgUUGCCU- -5' |
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10579 | 3' | -59.9 | NC_002687.1 | + | 159198 | 0.66 | 0.916306 |
Target: 5'- gGCCGCCGCcuccgGGCUUUCgaccgGCggCGACGGc -3' miRNA: 3'- -UGGCGGCG-----CUGAGGGa----CGa-GUUGCCu -5' |
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10579 | 3' | -59.9 | NC_002687.1 | + | 167890 | 0.71 | 0.644417 |
Target: 5'- cGuuGCCGCGaaGCUUCCgcgGCgCAACGGAu -3' miRNA: 3'- -UggCGGCGC--UGAGGGa--CGaGUUGCCU- -5' |
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10579 | 3' | -59.9 | NC_002687.1 | + | 195802 | 0.69 | 0.746495 |
Target: 5'- cACUGCgGUG-CUaCCCauuUGCUCAACGGGg -3' miRNA: 3'- -UGGCGgCGCuGA-GGG---ACGAGUUGCCU- -5' |
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10579 | 3' | -59.9 | NC_002687.1 | + | 199936 | 0.67 | 0.850872 |
Target: 5'- gUCGCCagagcucggaaaagGUGugUCgUCUGCUCGGCGGGg -3' miRNA: 3'- uGGCGG--------------CGCugAG-GGACGAGUUGCCU- -5' |
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10579 | 3' | -59.9 | NC_002687.1 | + | 200243 | 0.7 | 0.728425 |
Target: 5'- gACCG-CGCGGCUCUUgcggUGCUCAAUGuGAa -3' miRNA: 3'- -UGGCgGCGCUGAGGG----ACGAGUUGC-CU- -5' |
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10579 | 3' | -59.9 | NC_002687.1 | + | 214896 | 0.73 | 0.568974 |
Target: 5'- cGCCGCCGCcucUUUCCUGUaCGGCGGAa -3' miRNA: 3'- -UGGCGGCGcu-GAGGGACGaGUUGCCU- -5' |
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10579 | 3' | -59.9 | NC_002687.1 | + | 214917 | 0.67 | 0.859512 |
Target: 5'- cCCGCUGCaccccggccGAuauuuccucgaucCUCCCUGCcgaUCGGCGGAg -3' miRNA: 3'- uGGCGGCG---------CU-------------GAGGGACG---AGUUGCCU- -5' |
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10579 | 3' | -59.9 | NC_002687.1 | + | 221393 | 0.69 | 0.746495 |
Target: 5'- cACUGCgGUG-CUaCCCauuUGCUCAACGGGg -3' miRNA: 3'- -UGGCGgCGCuGA-GGG---ACGAGUUGCCU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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