Results 1 - 10 of 10 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
1058 | 5' | -55.9 | NC_000929.1 | + | 8682 | 0.73 | 0.211034 |
Target: 5'- -uGCCGGUcaGUCCGUCCGGUCGUg- -3' miRNA: 3'- acUGGUCGugUAGGCGGGCCAGUAag -5' |
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1058 | 5' | -55.9 | NC_000929.1 | + | 11588 | 0.69 | 0.373588 |
Target: 5'- cGAgCAGCAgcgcCA-CCGCCCGGuucuggucuUCGUUCa -3' miRNA: 3'- aCUgGUCGU----GUaGGCGGGCC---------AGUAAG- -5' |
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1058 | 5' | -55.9 | NC_000929.1 | + | 12742 | 0.69 | 0.373588 |
Target: 5'- -cACCGGCGCGagaaagaaaUCCGCCaGG-CAUUCg -3' miRNA: 3'- acUGGUCGUGU---------AGGCGGgCCaGUAAG- -5' |
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1058 | 5' | -55.9 | NC_000929.1 | + | 16222 | 0.71 | 0.290661 |
Target: 5'- gGGCguGCGCGUCUGCCa-GUUGUUCg -3' miRNA: 3'- aCUGguCGUGUAGGCGGgcCAGUAAG- -5' |
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1058 | 5' | -55.9 | NC_000929.1 | + | 17320 | 1.09 | 0.000447 |
Target: 5'- cUGACCAGCACAUCCGCCCGGUCAUUCu -3' miRNA: 3'- -ACUGGUCGUGUAGGCGGGCCAGUAAG- -5' |
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1058 | 5' | -55.9 | NC_000929.1 | + | 21855 | 0.66 | 0.513681 |
Target: 5'- aGGCCAGUGCGg-CGUuuGGUCAg-- -3' miRNA: 3'- aCUGGUCGUGUagGCGggCCAGUaag -5' |
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1058 | 5' | -55.9 | NC_000929.1 | + | 25149 | 0.7 | 0.321994 |
Target: 5'- -uGCCAGCGCAUCUuuaCCCGGUU--UCa -3' miRNA: 3'- acUGGUCGUGUAGGc--GGGCCAGuaAG- -5' |
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1058 | 5' | -55.9 | NC_000929.1 | + | 27158 | 0.69 | 0.347106 |
Target: 5'- cUGGCUGGCAgCuUCUGCCCGGUaugUCu -3' miRNA: 3'- -ACUGGUCGU-GuAGGCGGGCCAguaAG- -5' |
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1058 | 5' | -55.9 | NC_000929.1 | + | 28149 | 0.67 | 0.470126 |
Target: 5'- aUGACCAGCAaugCCGCCggagagcUGG-UAUUCa -3' miRNA: 3'- -ACUGGUCGUguaGGCGG-------GCCaGUAAG- -5' |
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1058 | 5' | -55.9 | NC_000929.1 | + | 30613 | 0.69 | 0.382715 |
Target: 5'- aUGACCGGCGauauaAUCCGCCacg-CGUUCc -3' miRNA: 3'- -ACUGGUCGUg----UAGGCGGgccaGUAAG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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