miRNA display CGI


Results 1 - 18 of 18 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10580 3' -60.2 NC_002687.1 + 260545 0.66 0.926518
Target:  5'- cCCUCU--UGACgGCGGcagcggcucauGGGAUGAGGa -3'
miRNA:   3'- aGGAGGgcACUGgCGCU-----------CCCUGCUCC- -5'
10580 3' -60.2 NC_002687.1 + 308856 0.66 0.926518
Target:  5'- gCCUCCCGcuGCUcggugGUGGGGGcgucaGCGGGGg -3'
miRNA:   3'- aGGAGGGCacUGG-----CGCUCCC-----UGCUCC- -5'
10580 3' -60.2 NC_002687.1 + 314224 0.66 0.905587
Target:  5'- uUCUUCuuGUGACaCGCGAcGaGGuacuuccuuaGCGAGGu -3'
miRNA:   3'- -AGGAGggCACUG-GCGCU-C-CC----------UGCUCC- -5'
10580 3' -60.2 NC_002687.1 + 179924 0.67 0.887862
Target:  5'- gCCUgCUGgacGACCugauuuCGAGGGACGAGa -3'
miRNA:   3'- aGGAgGGCa--CUGGc-----GCUCCCUGCUCc -5'
10580 3' -60.2 NC_002687.1 + 281778 0.67 0.887862
Target:  5'- -gCUCCCGUuGCgCGUGuGGGaacgGCGGGGg -3'
miRNA:   3'- agGAGGGCAcUG-GCGCuCCC----UGCUCC- -5'
10580 3' -60.2 NC_002687.1 + 44848 0.67 0.887862
Target:  5'- uUCCUCCCGccGAagaUGCGAuGGAaGAGGa -3'
miRNA:   3'- -AGGAGGGCa-CUg--GCGCUcCCUgCUCC- -5'
10580 3' -60.2 NC_002687.1 + 252576 0.67 0.875113
Target:  5'- gCgUCCCGgGACCGaGAGGGuccuuCGAGa -3'
miRNA:   3'- aGgAGGGCaCUGGCgCUCCCu----GCUCc -5'
10580 3' -60.2 NC_002687.1 + 275584 0.68 0.847506
Target:  5'- aCCUUCCGUGuuguGCCGCuAGGuGcaGCGGGGu -3'
miRNA:   3'- aGGAGGGCAC----UGGCGcUCC-C--UGCUCC- -5'
10580 3' -60.2 NC_002687.1 + 199818 0.68 0.825097
Target:  5'- uUCCUCCuCGacgGA-CGCGAGGagGugGAGGc -3'
miRNA:   3'- -AGGAGG-GCa--CUgGCGCUCC--CugCUCC- -5'
10580 3' -60.2 NC_002687.1 + 291422 0.68 0.825097
Target:  5'- cUCCUCUuaCGUGAacaCGaGGGGGGCGGGa -3'
miRNA:   3'- -AGGAGG--GCACUg--GCgCUCCCUGCUCc -5'
10580 3' -60.2 NC_002687.1 + 268112 0.69 0.801391
Target:  5'- -gCUUCgGgcggGGCUGCGGGGGGgGGGGg -3'
miRNA:   3'- agGAGGgCa---CUGGCGCUCCCUgCUCC- -5'
10580 3' -60.2 NC_002687.1 + 205718 0.69 0.801391
Target:  5'- -aCUCgCCGUGGaggcauugaCGcCGAGGGACGAGu -3'
miRNA:   3'- agGAG-GGCACUg--------GC-GCUCCCUGCUCc -5'
10580 3' -60.2 NC_002687.1 + 176470 0.7 0.741977
Target:  5'- cUCCUCCaUGUcGugCGaCGAGGGAuggauCGGGGa -3'
miRNA:   3'- -AGGAGG-GCA-CugGC-GCUCCCU-----GCUCC- -5'
10580 3' -60.2 NC_002687.1 + 159988 0.72 0.650971
Target:  5'- --aUCCCGUGACaaGCGcGGGGCGAGu -3'
miRNA:   3'- aggAGGGCACUGg-CGCuCCCUGCUCc -5'
10580 3' -60.2 NC_002687.1 + 253586 0.72 0.650971
Target:  5'- --aUCUCGUGACgguCGCGA-GGACGAGGg -3'
miRNA:   3'- aggAGGGCACUG---GCGCUcCCUGCUCC- -5'
10580 3' -60.2 NC_002687.1 + 108645 0.72 0.641696
Target:  5'- aUCUCCCGUGACCGaCaAGGaGCGAGc -3'
miRNA:   3'- aGGAGGGCACUGGC-GcUCCcUGCUCc -5'
10580 3' -60.2 NC_002687.1 + 85381 0.75 0.461863
Target:  5'- gCCUUUCGcaGACCGCGGGGGACGGc- -3'
miRNA:   3'- aGGAGGGCa-CUGGCGCUCCCUGCUcc -5'
10580 3' -60.2 NC_002687.1 + 315884 1.11 0.002726
Target:  5'- aUCCUCCCGUGACCGCGAGGGACGAGGg -3'
miRNA:   3'- -AGGAGGGCACUGGCGCUCCCUGCUCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.