miRNA display CGI


Results 21 - 40 of 91 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10580 5' -52 NC_002687.1 + 312744 0.66 0.998041
Target:  5'- --gGUUGCACCAaCGCgaGUCGauaUGGCCg -3'
miRNA:   3'- cugUAACGUGGUgGCGg-UAGU---ACUGG- -5'
10580 5' -52 NC_002687.1 + 211756 0.66 0.998041
Target:  5'- cGGCuUUGUAuUCGUCGCCGUCGUcGGCCg -3'
miRNA:   3'- -CUGuAACGU-GGUGGCGGUAGUA-CUGG- -5'
10580 5' -52 NC_002687.1 + 128141 0.66 0.998041
Target:  5'- --uGUUGCugCGCguCGgCAUCAgUGACCa -3'
miRNA:   3'- cugUAACGugGUG--GCgGUAGU-ACUGG- -5'
10580 5' -52 NC_002687.1 + 259450 0.66 0.998041
Target:  5'- cGACAcguauguggUGCAgCA-CGCCAUCAagagaUGGCCa -3'
miRNA:   3'- -CUGUa--------ACGUgGUgGCGGUAGU-----ACUGG- -5'
10580 5' -52 NC_002687.1 + 224608 0.66 0.998041
Target:  5'- cGGCAguaGCaucGCCAUCGCCAUCGccaucGCCa -3'
miRNA:   3'- -CUGUaa-CG---UGGUGGCGGUAGUac---UGG- -5'
10580 5' -52 NC_002687.1 + 210355 0.66 0.998041
Target:  5'- aGGCAccaucUGCACCACCGgcaccacgggcaCCAUC-UGcACCa -3'
miRNA:   3'- -CUGUa----ACGUGGUGGC------------GGUAGuAC-UGG- -5'
10580 5' -52 NC_002687.1 + 260957 0.67 0.997684
Target:  5'- uGGCAaaagGCACgCuggugGCCGCCAaCGUGAUCg -3'
miRNA:   3'- -CUGUaa--CGUG-G-----UGGCGGUaGUACUGG- -5'
10580 5' -52 NC_002687.1 + 3635 0.67 0.997684
Target:  5'- gGACAcaccGCACUACacuuCGCCAUCGguggucgaaaccUGGCCg -3'
miRNA:   3'- -CUGUaa--CGUGGUG----GCGGUAGU------------ACUGG- -5'
10580 5' -52 NC_002687.1 + 224466 0.67 0.997684
Target:  5'- -----aGCGCCACCGCCAcCGcGuCCc -3'
miRNA:   3'- cuguaaCGUGGUGGCGGUaGUaCuGG- -5'
10580 5' -52 NC_002687.1 + 34353 0.67 0.997684
Target:  5'- aGACAaaggUUGaCGCCGCCGCUAaccuauugUAUGACg -3'
miRNA:   3'- -CUGU----AAC-GUGGUGGCGGUa-------GUACUGg -5'
10580 5' -52 NC_002687.1 + 30364 0.67 0.997273
Target:  5'- uACA---CGCCGCCGCCaAUCGUcACCg -3'
miRNA:   3'- cUGUaacGUGGUGGCGG-UAGUAcUGG- -5'
10580 5' -52 NC_002687.1 + 238751 0.67 0.997273
Target:  5'- cGACAUcgGUAUgAUgGCCAUCAacGACCu -3'
miRNA:   3'- -CUGUAa-CGUGgUGgCGGUAGUa-CUGG- -5'
10580 5' -52 NC_002687.1 + 118431 0.67 0.996803
Target:  5'- aGACAUUGUAuCCAcCCGCaagggCggGACCu -3'
miRNA:   3'- -CUGUAACGU-GGU-GGCGgua--GuaCUGG- -5'
10580 5' -52 NC_002687.1 + 331911 0.67 0.996268
Target:  5'- -----aGCGCCGCCGCCGcaaUgGUGugaGCCg -3'
miRNA:   3'- cuguaaCGUGGUGGCGGU---AgUAC---UGG- -5'
10580 5' -52 NC_002687.1 + 241497 0.67 0.996268
Target:  5'- uGACGUguccUGUGCCgaaaucacGCCGCCAcCGuUGGCCa -3'
miRNA:   3'- -CUGUA----ACGUGG--------UGGCGGUaGU-ACUGG- -5'
10580 5' -52 NC_002687.1 + 202853 0.67 0.995914
Target:  5'- aGACGUUcGuCAUCACCGCCAaacagguuucccUCgugcuuucuccucguGUGACCa -3'
miRNA:   3'- -CUGUAA-C-GUGGUGGCGGU------------AG---------------UACUGG- -5'
10580 5' -52 NC_002687.1 + 237683 0.67 0.995663
Target:  5'- cACAUUGUgugugacaaauGCCuuCgCGCCAUgAUGGCCg -3'
miRNA:   3'- cUGUAACG-----------UGGu-G-GCGGUAgUACUGG- -5'
10580 5' -52 NC_002687.1 + 224715 0.67 0.995663
Target:  5'- aGCAUcGCcaucgccaucGCCAUCGCCAUCGccACCa -3'
miRNA:   3'- cUGUAaCG----------UGGUGGCGGUAGUacUGG- -5'
10580 5' -52 NC_002687.1 + 162241 0.67 0.995663
Target:  5'- gGAUGUUucGCcacuACCACCGCCuuccuUCAUGAgCg -3'
miRNA:   3'- -CUGUAA--CG----UGGUGGCGGu----AGUACUgG- -5'
10580 5' -52 NC_002687.1 + 159211 0.67 0.995663
Target:  5'- uGGCcUUGUcgacgGCCGCCGCC-UCcgGGCUu -3'
miRNA:   3'- -CUGuAACG-----UGGUGGCGGuAGuaCUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.