Results 21 - 35 of 35 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
10582 | 3' | -49.4 | NC_002687.1 | + | 272738 | 0.67 | 0.999855 |
Target: 5'- uGGGAcuuuccuuUUUUUAGCGUCCAuCGGAGc-- -3' miRNA: 3'- uCCCU--------AAAAGUUGCGGGU-GCCUUugu -5' |
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10582 | 3' | -49.4 | NC_002687.1 | + | 317254 | 0.67 | 0.999816 |
Target: 5'- cGGGAUccggacgUUCGAgcUGCCCGCgcgcuggaGGAAGCAc -3' miRNA: 3'- uCCCUAa------AAGUU--GCGGGUG--------CCUUUGU- -5' |
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10582 | 3' | -49.4 | NC_002687.1 | + | 205176 | 0.67 | 0.999767 |
Target: 5'- gAGGGAUUgUCgGGCGCguguUCACGaGAGACGa -3' miRNA: 3'- -UCCCUAAaAG-UUGCG----GGUGC-CUUUGU- -5' |
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10582 | 3' | -49.4 | NC_002687.1 | + | 160445 | 0.67 | 0.999881 |
Target: 5'- cAGGGucaggaaGGCcaaGCCCACGGGGACc -3' miRNA: 3'- -UCCCuaaaag-UUG---CGGGUGCCUUUGu -5' |
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10582 | 3' | -49.4 | NC_002687.1 | + | 169510 | 0.67 | 0.999767 |
Target: 5'- -uGGAU--UCGACGCCUGCGGGc--- -3' miRNA: 3'- ucCCUAaaAGUUGCGGGUGCCUuugu -5' |
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10582 | 3' | -49.4 | NC_002687.1 | + | 301468 | 0.67 | 0.999887 |
Target: 5'- aAGGGAaaa-----GCCCAUGGAAGCc -3' miRNA: 3'- -UCCCUaaaaguugCGGGUGCCUUUGu -5' |
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10582 | 3' | -49.4 | NC_002687.1 | + | 280932 | 0.67 | 0.999707 |
Target: 5'- gGGGGcccguGUUgaagCAGCGUCgGCGGggGCc -3' miRNA: 3'- -UCCC-----UAAaa--GUUGCGGgUGCCuuUGu -5' |
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10582 | 3' | -49.4 | NC_002687.1 | + | 13057 | 0.66 | 0.999933 |
Target: 5'- gAGGuGAga---GAUGCuCCGCGGAAACu -3' miRNA: 3'- -UCC-CUaaaagUUGCG-GGUGCCUUUGu -5' |
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10582 | 3' | -49.4 | NC_002687.1 | + | 95030 | 0.66 | 0.999933 |
Target: 5'- uGGGc---UCAAUGUUgGCGGAGACGg -3' miRNA: 3'- uCCCuaaaAGUUGCGGgUGCCUUUGU- -5' |
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10582 | 3' | -49.4 | NC_002687.1 | + | 45926 | 0.66 | 0.999947 |
Target: 5'- cGGGAaguUUUUCAagGCaCCCAUGGAgcucgggGACAg -3' miRNA: 3'- uCCCU---AAAAGU--UGcGGGUGCCU-------UUGU- -5' |
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10582 | 3' | -49.4 | NC_002687.1 | + | 306974 | 0.66 | 0.999913 |
Target: 5'- cGGGAUgaugcuaGACGUCUACGGugGCu -3' miRNA: 3'- uCCCUAaaag---UUGCGGGUGCCuuUGu -5' |
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10582 | 3' | -49.4 | NC_002687.1 | + | 29072 | 0.66 | 0.999933 |
Target: 5'- cGGGGAUUcUUGuCGCauaCACGGGGAUg -3' miRNA: 3'- -UCCCUAAaAGUuGCGg--GUGCCUUUGu -5' |
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10582 | 3' | -49.4 | NC_002687.1 | + | 319595 | 0.66 | 0.999933 |
Target: 5'- cGGGAgcgUUCGcgagagaagcACGgCCugGGAGAUg -3' miRNA: 3'- uCCCUaa-AAGU----------UGCgGGugCCUUUGu -5' |
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10582 | 3' | -49.4 | NC_002687.1 | + | 168254 | 0.66 | 0.999944 |
Target: 5'- gAGGcGUgucaUUUCAGCGCCCucagucaccacgagGCGGAGuACAg -3' miRNA: 3'- -UCCcUA----AAAGUUGCGGG--------------UGCCUU-UGU- -5' |
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10582 | 3' | -49.4 | NC_002687.1 | + | 202318 | 0.66 | 0.999933 |
Target: 5'- gGGGGAagaaCAGCGCCUgauCGG-AGCAg -3' miRNA: 3'- -UCCCUaaaaGUUGCGGGu--GCCuUUGU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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