miRNA display CGI


Results 1 - 20 of 29 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10582 5' -55.5 NC_002687.1 + 69975 0.7 0.879094
Target:  5'- uGUCGUACAugcCGCUGGCgGCUCUG-GCGg -3'
miRNA:   3'- -CAGCGUGU---GCGACUGgUGGGACuUGU- -5'
10582 5' -55.5 NC_002687.1 + 140717 0.72 0.818495
Target:  5'- -gCGC-CAUGCUGGCCGCCaaGGACu -3'
miRNA:   3'- caGCGuGUGCGACUGGUGGgaCUUGu -5'
10582 5' -55.5 NC_002687.1 + 318730 1.08 0.007944
Target:  5'- uGUCGCACACGCUGACCACCCUGAACAu -3'
miRNA:   3'- -CAGCGUGUGCGACUGGUGGGACUUGU- -5'
10582 5' -55.5 NC_002687.1 + 143024 0.66 0.985439
Target:  5'- uGUUGCGCACGUcGAUgaaGCCCUcggGGGCAu -3'
miRNA:   3'- -CAGCGUGUGCGaCUGg--UGGGA---CUUGU- -5'
10582 5' -55.5 NC_002687.1 + 253798 0.67 0.970059
Target:  5'- aUC-CugGCGCUGGCCcgaACCCUGuuggGCGa -3'
miRNA:   3'- cAGcGugUGCGACUGG---UGGGACu---UGU- -5'
10582 5' -55.5 NC_002687.1 + 309145 0.68 0.953585
Target:  5'- cGUC-CAcCACGCUcACgACCCUGAGCc -3'
miRNA:   3'- -CAGcGU-GUGCGAcUGgUGGGACUUGu -5'
10582 5' -55.5 NC_002687.1 + 21843 0.71 0.864335
Target:  5'- -gCGCACACGCUGGCgGCgggggaaCCUGugGACAu -3'
miRNA:   3'- caGCGUGUGCGACUGgUG-------GGAC--UUGU- -5'
10582 5' -55.5 NC_002687.1 + 257696 0.66 0.983723
Target:  5'- aUCGCG-GCGCUGuCaGCCUUGAACGc -3'
miRNA:   3'- cAGCGUgUGCGACuGgUGGGACUUGU- -5'
10582 5' -55.5 NC_002687.1 + 77637 0.68 0.952047
Target:  5'- uUCGCGCACGUcuuguUGACCAaugacgacgacgaCUUGAGCGc -3'
miRNA:   3'- cAGCGUGUGCG-----ACUGGUg------------GGACUUGU- -5'
10582 5' -55.5 NC_002687.1 + 253610 0.7 0.90471
Target:  5'- -cUGCGCGCGUUGACCGCgaUaGAACAg -3'
miRNA:   3'- caGCGUGUGCGACUGGUGggA-CUUGU- -5'
10582 5' -55.5 NC_002687.1 + 85494 0.69 0.921672
Target:  5'- --gGUGCACGC-GGCCuCCCUGGACc -3'
miRNA:   3'- cagCGUGUGCGaCUGGuGGGACUUGu -5'
10582 5' -55.5 NC_002687.1 + 240478 0.66 0.983723
Target:  5'- uUUGCAUGCGCUGcacggaucACCGaucuUCCUGAGCu -3'
miRNA:   3'- cAGCGUGUGCGAC--------UGGU----GGGACUUGu -5'
10582 5' -55.5 NC_002687.1 + 300635 0.66 0.977653
Target:  5'- uGUCGCGCuCGCUucaaucguaGCCACCC-GAGCc -3'
miRNA:   3'- -CAGCGUGuGCGAc--------UGGUGGGaCUUGu -5'
10582 5' -55.5 NC_002687.1 + 13618 0.67 0.9753
Target:  5'- -aCGCACACGUUucccguugugucGAUuucgcuaacacuUACCCUGAACAc -3'
miRNA:   3'- caGCGUGUGCGA------------CUG------------GUGGGACUUGU- -5'
10582 5' -55.5 NC_002687.1 + 58495 0.69 0.920064
Target:  5'- gGUCGCGCguauuguacagccgGCGCgcucGGCCGCCCUcGACu -3'
miRNA:   3'- -CAGCGUG--------------UGCGa---CUGGUGGGAcUUGu -5'
10582 5' -55.5 NC_002687.1 + 182436 0.69 0.926887
Target:  5'- --aGCGgGCGC-GACCGCCgaGGACAu -3'
miRNA:   3'- cagCGUgUGCGaCUGGUGGgaCUUGU- -5'
10582 5' -55.5 NC_002687.1 + 206385 0.69 0.936658
Target:  5'- -aCGUAUACGagccaUGACUACCCUucGGACAc -3'
miRNA:   3'- caGCGUGUGCg----ACUGGUGGGA--CUUGU- -5'
10582 5' -55.5 NC_002687.1 + 39371 0.68 0.940768
Target:  5'- --aGCAUcaGCGCUGuuuuuccGCCGCCCUGGAa- -3'
miRNA:   3'- cagCGUG--UGCGAC-------UGGUGGGACUUgu -5'
10582 5' -55.5 NC_002687.1 + 168789 0.67 0.964068
Target:  5'- gGUCGCGCGCGCaaACgAUCCcgGGACGg -3'
miRNA:   3'- -CAGCGUGUGCGacUGgUGGGa-CUUGU- -5'
10582 5' -55.5 NC_002687.1 + 271190 0.68 0.949676
Target:  5'- -cCGCGCACuCuUGGCCagaGCUCUGAACAu -3'
miRNA:   3'- caGCGUGUGcG-ACUGG---UGGGACUUGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.