Results 21 - 29 of 29 are showing below:
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| ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value
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| Predicted miRNA align pattern | |||||||
| 10582 | 5' | -55.5 | NC_002687.1 | + | 58495 | 0.69 | 0.920064 |
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Target: 5'- gGUCGCGCguauuguacagccgGCGCgcucGGCCGCCCUcGACu -3' miRNA: 3'- -CAGCGUG--------------UGCGa---CUGGUGGGAcUUGu -5' |
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| 10582 | 5' | -55.5 | NC_002687.1 | + | 253610 | 0.7 | 0.90471 |
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Target: 5'- -cUGCGCGCGUUGACCGCgaUaGAACAg -3' miRNA: 3'- caGCGUGUGCGACUGGUGggA-CUUGU- -5' |
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| 10582 | 5' | -55.5 | NC_002687.1 | + | 69975 | 0.7 | 0.879094 |
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Target: 5'- uGUCGUACAugcCGCUGGCgGCUCUG-GCGg -3' miRNA: 3'- -CAGCGUGU---GCGACUGgUGGGACuUGU- -5' |
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| 10582 | 5' | -55.5 | NC_002687.1 | + | 21843 | 0.71 | 0.864335 |
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Target: 5'- -gCGCACACGCUGGCgGCgggggaaCCUGugGACAu -3' miRNA: 3'- caGCGUGUGCGACUGgUG-------GGAC--UUGU- -5' |
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| 10582 | 5' | -55.5 | NC_002687.1 | + | 235456 | 0.72 | 0.826684 |
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Target: 5'- uUCGCGCGCGCUucuucGGCCGCCUcccucucuaGAACAa -3' miRNA: 3'- cAGCGUGUGCGA-----CUGGUGGGa--------CUUGU- -5' |
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| 10582 | 5' | -55.5 | NC_002687.1 | + | 140717 | 0.72 | 0.818495 |
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Target: 5'- -gCGC-CAUGCUGGCCGCCaaGGACu -3' miRNA: 3'- caGCGuGUGCGACUGGUGGgaCUUGu -5' |
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| 10582 | 5' | -55.5 | NC_002687.1 | + | 177154 | 0.74 | 0.729277 |
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Target: 5'- --aGCucCACGCUGAUCGCCCUGucauACAc -3' miRNA: 3'- cagCGu-GUGCGACUGGUGGGACu---UGU- -5' |
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| 10582 | 5' | -55.5 | NC_002687.1 | + | 318730 | 1.08 | 0.007944 |
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Target: 5'- uGUCGCACACGCUGACCACCCUGAACAu -3' miRNA: 3'- -CAGCGUGUGCGACUGGUGGGACUUGU- -5' |
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| 10582 | 5' | -55.5 | NC_002687.1 | + | 247185 | 1.08 | 0.007944 |
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Target: 5'- uGUCGCACACGCUGACCACCCUGAACAu -3' miRNA: 3'- -CAGCGUGUGCGACUGGUGGGACUUGU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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