miRNA display CGI


Results 1 - 12 of 12 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10583 5' -49 NC_002687.1 + 237644 0.66 0.999983
Target:  5'- aCGACGGCgUGUACCUca-CCg---- -3'
miRNA:   3'- gGCUGCCGaACAUGGGaaaGGauaau -5'
10583 5' -49 NC_002687.1 + 114954 0.66 0.999968
Target:  5'- uCCGuCGGCgaGUAUCCUUcgccUCCUu--- -3'
miRNA:   3'- -GGCuGCCGaaCAUGGGAA----AGGAuaau -5'
10583 5' -49 NC_002687.1 + 201228 0.67 0.999928
Target:  5'- cCCGGCGGCgccacGCUCUaUCCUGc-- -3'
miRNA:   3'- -GGCUGCCGaaca-UGGGAaAGGAUaau -5'
10583 5' -49 NC_002687.1 + 217810 0.67 0.999906
Target:  5'- gCCGGCucGCUaggGUACCCUUUCUa---- -3'
miRNA:   3'- -GGCUGc-CGAa--CAUGGGAAAGGauaau -5'
10583 5' -49 NC_002687.1 + 30470 0.67 0.999879
Target:  5'- -aGACGGg-UGUGCCCUaucgcUCCUGUc- -3'
miRNA:   3'- ggCUGCCgaACAUGGGAa----AGGAUAau -5'
10583 5' -49 NC_002687.1 + 47127 0.68 0.999751
Target:  5'- gCCGACGccuuGCUUGUACgCgUUUCCg---- -3'
miRNA:   3'- -GGCUGC----CGAACAUG-GgAAAGGauaau -5'
10583 5' -49 NC_002687.1 + 142175 0.68 0.999688
Target:  5'- gCCGugGGCcgacaagaGUACCCUUUCg----- -3'
miRNA:   3'- -GGCugCCGaa------CAUGGGAAAGgauaau -5'
10583 5' -49 NC_002687.1 + 163348 0.69 0.99927
Target:  5'- cUCGGCGuGUaugcuuuuccgaUUGUACCCUcUUCCUAUg- -3'
miRNA:   3'- -GGCUGC-CG------------AACAUGGGA-AAGGAUAau -5'
10583 5' -49 NC_002687.1 + 160084 0.72 0.991436
Target:  5'- cCCGugGGCUUG-GCCU--UCCUGa-- -3'
miRNA:   3'- -GGCugCCGAACaUGGGaaAGGAUaau -5'
10583 5' -49 NC_002687.1 + 159735 0.72 0.988923
Target:  5'- gUCGuCGGCUUGUGCCa--UCCUGg-- -3'
miRNA:   3'- -GGCuGCCGAACAUGGgaaAGGAUaau -5'
10583 5' -49 NC_002687.1 + 319548 1.1 0.025301
Target:  5'- cCCGACGGCUUGUACCCUUUCCUAUUAa -3'
miRNA:   3'- -GGCUGCCGAACAUGGGAAAGGAUAAU- -5'
10583 5' -49 NC_002687.1 + 246367 1.1 0.025301
Target:  5'- cCCGACGGCUUGUACCCUUUCCUAUUAa -3'
miRNA:   3'- -GGCUGCCGAACAUGGGAAAGGAUAAU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.