miRNA display CGI


Results 1 - 20 of 26 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10584 3' -58.9 NC_002687.1 + 324005 0.66 0.93197
Target:  5'- uCGUUUGUcGGUGUGuaCGGCGGu--- -3'
miRNA:   3'- -GCAAACGaCCGCACcgGCCGCCcuuc -5'
10584 3' -58.9 NC_002687.1 + 225847 0.66 0.93197
Target:  5'- aGgggGgUGGUGUGGgCGGCcGGGAc- -3'
miRNA:   3'- gCaaaCgACCGCACCgGCCG-CCCUuc -5'
10584 3' -58.9 NC_002687.1 + 226033 0.66 0.93197
Target:  5'- aGgggGgUGGUGUGGgCGGCcGGGAc- -3'
miRNA:   3'- gCaaaCgACCGCACCgGCCG-CCCUuc -5'
10584 3' -58.9 NC_002687.1 + 226405 0.66 0.93197
Target:  5'- aGgggGgUGGUGUGGgCGGCcGGGAc- -3'
miRNA:   3'- gCaaaCgACCGCACCgGCCG-CCCUuc -5'
10584 3' -58.9 NC_002687.1 + 24662 0.66 0.93197
Target:  5'- -------aGGUGUuGCCGGUGGGGAGa -3'
miRNA:   3'- gcaaacgaCCGCAcCGGCCGCCCUUC- -5'
10584 3' -58.9 NC_002687.1 + 325156 0.66 0.93197
Target:  5'- uCGUUUGUcGGUGUGuaCGGCGGu--- -3'
miRNA:   3'- -GCAAACGaCCGCACcgGCCGCCcuuc -5'
10584 3' -58.9 NC_002687.1 + 324389 0.66 0.93197
Target:  5'- uCGUUUGUcGGUGUGuaCGGCGGu--- -3'
miRNA:   3'- -GCAAACGaCCGCACcgGCCGCCcuuc -5'
10584 3' -58.9 NC_002687.1 + 324772 0.66 0.93197
Target:  5'- uCGUUUGUcGGUGUGuaCGGCGGu--- -3'
miRNA:   3'- -GCAAACGaCCGCACcgGCCGCCcuuc -5'
10584 3' -58.9 NC_002687.1 + 87219 0.66 0.927124
Target:  5'- uGUUgcucGCUGGUGcggGGgaGGCGGGAu- -3'
miRNA:   3'- gCAAa---CGACCGCa--CCggCCGCCCUuc -5'
10584 3' -58.9 NC_002687.1 + 223467 0.67 0.89979
Target:  5'- gGUggUGCUGGCGgaGGUucgggaugcggUGGCGGGGGc -3'
miRNA:   3'- gCAa-ACGACCGCa-CCG-----------GCCGCCCUUc -5'
10584 3' -58.9 NC_002687.1 + 47413 0.67 0.891848
Target:  5'- aGUUUGCUGagaaguaggcagaaGCGuUGGCCGGaCGGuGGGu -3'
miRNA:   3'- gCAAACGAC--------------CGC-ACCGGCC-GCC-CUUc -5'
10584 3' -58.9 NC_002687.1 + 179433 0.68 0.845792
Target:  5'- ----aGCUGG-G-GGUgGGCGGGAGGa -3'
miRNA:   3'- gcaaaCGACCgCaCCGgCCGCCCUUC- -5'
10584 3' -58.9 NC_002687.1 + 154785 0.69 0.822631
Target:  5'- gGUucUUGCUcGGCGUGGuuGuCGGGAu- -3'
miRNA:   3'- gCA--AACGA-CCGCACCggCcGCCCUuc -5'
10584 3' -58.9 NC_002687.1 + 226219 0.69 0.806427
Target:  5'- aGgggGgUGGCGUGGgCGGCcGGGAc- -3'
miRNA:   3'- gCaaaCgACCGCACCgGCCG-CCCUuc -5'
10584 3' -58.9 NC_002687.1 + 225661 0.69 0.806427
Target:  5'- aGgggGgUGGCGUGGgCGGCcGGGAc- -3'
miRNA:   3'- gCaaaCgACCGCACCgGCCG-CCCUuc -5'
10584 3' -58.9 NC_002687.1 + 307611 0.72 0.671393
Target:  5'- gCGgcggUGCUGGUGguggaGGCCGGaccucuGGGAAGa -3'
miRNA:   3'- -GCaa--ACGACCGCa----CCGGCCg-----CCCUUC- -5'
10584 3' -58.9 NC_002687.1 + 329787 0.72 0.652379
Target:  5'- gCGUgcccGgUGGCGUGGCCGGaGGaGAGGc -3'
miRNA:   3'- -GCAaa--CgACCGCACCGGCCgCC-CUUC- -5'
10584 3' -58.9 NC_002687.1 + 302276 0.72 0.642847
Target:  5'- ---gUGCUGGCGUGcucguauaGCCGGUGGGc-- -3'
miRNA:   3'- gcaaACGACCGCAC--------CGGCCGCCCuuc -5'
10584 3' -58.9 NC_002687.1 + 224164 0.72 0.642847
Target:  5'- ----cGCUGGCgGUGGCggUGGCGGGGGc -3'
miRNA:   3'- gcaaaCGACCG-CACCG--GCCGCCCUUc -5'
10584 3' -58.9 NC_002687.1 + 136063 0.74 0.52046
Target:  5'- ---aUGaaaGGCGUGGCCGGCacgGGGAAGu -3'
miRNA:   3'- gcaaACga-CCGCACCGGCCG---CCCUUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.