Results 21 - 40 of 40 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
10584 | 5' | -55.4 | NC_002687.1 | + | 50101 | 0.69 | 0.924219 |
Target: 5'- -aCUGUACUGCUGUAUACugcuCCGAgAGc -3' miRNA: 3'- ugGACAUGGCGGCAUGUGu---GGCUgUU- -5' |
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10584 | 5' | -55.4 | NC_002687.1 | + | 5046 | 0.7 | 0.907537 |
Target: 5'- -gCUGUucuCUGCCaauUACGCACCGACAGu -3' miRNA: 3'- ugGACAu--GGCGGc--AUGUGUGGCUGUU- -5' |
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10584 | 5' | -55.4 | NC_002687.1 | + | 79508 | 0.7 | 0.901539 |
Target: 5'- -aCUGUACCG-CGUACGCGuCCGAUu- -3' miRNA: 3'- ugGACAUGGCgGCAUGUGU-GGCUGuu -5' |
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10584 | 5' | -55.4 | NC_002687.1 | + | 24060 | 0.7 | 0.895325 |
Target: 5'- gGCCUGUcccACUGCC-UGCACuCCGACu- -3' miRNA: 3'- -UGGACA---UGGCGGcAUGUGuGGCUGuu -5' |
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10584 | 5' | -55.4 | NC_002687.1 | + | 65182 | 0.7 | 0.895325 |
Target: 5'- uUCUgGUACCGCUGUgucauGgACACCGGCGAc -3' miRNA: 3'- uGGA-CAUGGCGGCA-----UgUGUGGCUGUU- -5' |
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10584 | 5' | -55.4 | NC_002687.1 | + | 83767 | 0.7 | 0.888899 |
Target: 5'- gACCgcc-CCGUCGUuCACACCGACGGu -3' miRNA: 3'- -UGGacauGGCGGCAuGUGUGGCUGUU- -5' |
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10584 | 5' | -55.4 | NC_002687.1 | + | 315824 | 0.7 | 0.888899 |
Target: 5'- cGCCggGUGCCGCCGccGCAC-CCGAa-- -3' miRNA: 3'- -UGGa-CAUGGCGGCa-UGUGuGGCUguu -5' |
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10584 | 5' | -55.4 | NC_002687.1 | + | 332055 | 0.7 | 0.875424 |
Target: 5'- gACCUGUGCCGgaUCGUgggucguggaGC-CACCGACAc -3' miRNA: 3'- -UGGACAUGGC--GGCA----------UGuGUGGCUGUu -5' |
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10584 | 5' | -55.4 | NC_002687.1 | + | 325767 | 0.71 | 0.867668 |
Target: 5'- gGCgUGUAuugcucuCCGCCGU-UGCACCGACAGc -3' miRNA: 3'- -UGgACAU-------GGCGGCAuGUGUGGCUGUU- -5' |
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10584 | 5' | -55.4 | NC_002687.1 | + | 72657 | 0.71 | 0.861145 |
Target: 5'- -aCUGUACCG-UGUAcCACGCCGAUAGa -3' miRNA: 3'- ugGACAUGGCgGCAU-GUGUGGCUGUU- -5' |
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10584 | 5' | -55.4 | NC_002687.1 | + | 82675 | 0.71 | 0.846102 |
Target: 5'- aACCUGaACCGgUGUGCACAUCG-CAGg -3' miRNA: 3'- -UGGACaUGGCgGCAUGUGUGGCuGUU- -5' |
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10584 | 5' | -55.4 | NC_002687.1 | + | 159153 | 0.71 | 0.846102 |
Target: 5'- -gUUGUcGCCGCCGUGCaucACAUCGGCGAc -3' miRNA: 3'- ugGACA-UGGCGGCAUG---UGUGGCUGUU- -5' |
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10584 | 5' | -55.4 | NC_002687.1 | + | 253488 | 0.72 | 0.813913 |
Target: 5'- gACCUGUgugcGCUGaCCGUACACACgGAuCAGu -3' miRNA: 3'- -UGGACA----UGGC-GGCAUGUGUGgCU-GUU- -5' |
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10584 | 5' | -55.4 | NC_002687.1 | + | 326700 | 0.72 | 0.805467 |
Target: 5'- uCCgagcagGuuGCCGUACACACCGACu- -3' miRNA: 3'- uGGaca---UggCGGCAUGUGUGGCUGuu -5' |
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10584 | 5' | -55.4 | NC_002687.1 | + | 72914 | 0.72 | 0.788146 |
Target: 5'- cGCCgccGCCGCCG-ACACACCGcCGAg -3' miRNA: 3'- -UGGacaUGGCGGCaUGUGUGGCuGUU- -5' |
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10584 | 5' | -55.4 | NC_002687.1 | + | 325159 | 0.98 | 0.034158 |
Target: 5'- gGCCUGUACCGCCGUACcCACCGACAAa -3' miRNA: 3'- -UGGACAUGGCGGCAUGuGUGGCUGUU- -5' |
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10584 | 5' | -55.4 | NC_002687.1 | + | 324791 | 1.06 | 0.010653 |
Target: 5'- gACCUGUACCGCCGUACACACCGACAAa -3' miRNA: 3'- -UGGACAUGGCGGCAUGUGUGGCUGUU- -5' |
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10584 | 5' | -55.4 | NC_002687.1 | + | 324407 | 1.06 | 0.010653 |
Target: 5'- gACCUGUACCGCCGUACACACCGACAAa -3' miRNA: 3'- -UGGACAUGGCGGCAUGUGUGGCUGUU- -5' |
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10584 | 5' | -55.4 | NC_002687.1 | + | 324024 | 1.06 | 0.010653 |
Target: 5'- gACCUGUACCGCCGUACACACCGACAAa -3' miRNA: 3'- -UGGACAUGGCGGCAUGUGUGGCUGUU- -5' |
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10584 | 5' | -55.4 | NC_002687.1 | + | 323640 | 1.06 | 0.010653 |
Target: 5'- gACCUGUACCGCCGUACACACCGACAAa -3' miRNA: 3'- -UGGACAUGGCGGCAUGUGUGGCUGUU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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