miRNA display CGI


Results 1 - 20 of 22 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10585 3' -59 NC_002687.1 + 203346 0.66 0.932116
Target:  5'- uGAUgUCGUcgugagUCaccgugguggagucaGaCCCUUCUUCGCCCACg -3'
miRNA:   3'- -CUAgAGCG------AG---------------C-GGGAAGGAGCGGGUG- -5'
10585 3' -59 NC_002687.1 + 134142 0.66 0.930194
Target:  5'- ----aCGCUUGCCacaaCCUCGuCCCACc -3'
miRNA:   3'- cuagaGCGAGCGGgaa-GGAGC-GGGUG- -5'
10585 3' -59 NC_002687.1 + 304564 0.66 0.925243
Target:  5'- uGGUgUgGCUCGUCCUcagCUUCGCCaACa -3'
miRNA:   3'- -CUAgAgCGAGCGGGAa--GGAGCGGgUG- -5'
10585 3' -59 NC_002687.1 + 196257 0.66 0.925243
Target:  5'- cGGUCgUUGC-CGCCCgaaaUCCgaCGCUCACg -3'
miRNA:   3'- -CUAG-AGCGaGCGGGa---AGGa-GCGGGUG- -5'
10585 3' -59 NC_002687.1 + 221848 0.66 0.925243
Target:  5'- cGGUCgUUGC-CGCCCgaaaUCCgaCGCUCACg -3'
miRNA:   3'- -CUAG-AGCGaGCGGGa---AGGa-GCGGGUG- -5'
10585 3' -59 NC_002687.1 + 235459 0.66 0.925243
Target:  5'- -uUCuUCGCgCGCgCUUCUUCGgCCGCc -3'
miRNA:   3'- cuAG-AGCGaGCGgGAAGGAGCgGGUG- -5'
10585 3' -59 NC_002687.1 + 130861 0.66 0.920082
Target:  5'- -cUCUUGUUCGUCUUggucggCCUCGCCgAg -3'
miRNA:   3'- cuAGAGCGAGCGGGAa-----GGAGCGGgUg -5'
10585 3' -59 NC_002687.1 + 101837 0.66 0.920082
Target:  5'- -cUUUCGUggUGCCC-UCgUCGUCCACg -3'
miRNA:   3'- cuAGAGCGa-GCGGGaAGgAGCGGGUG- -5'
10585 3' -59 NC_002687.1 + 246928 0.66 0.909131
Target:  5'- --cCUCGaugagugaaacCUCGaCCuCUUCCUCGCCCu- -3'
miRNA:   3'- cuaGAGC-----------GAGC-GG-GAAGGAGCGGGug -5'
10585 3' -59 NC_002687.1 + 133606 0.66 0.909131
Target:  5'- ----cCGCgUUGCCCgccuugUCUUUGCCCGCg -3'
miRNA:   3'- cuagaGCG-AGCGGGa-----AGGAGCGGGUG- -5'
10585 3' -59 NC_002687.1 + 318987 0.66 0.909131
Target:  5'- --cCUCGaugaguggaacCUCGaCCuCUUCCUCGCCCu- -3'
miRNA:   3'- cuaGAGC-----------GAGC-GG-GAAGGAGCGGGug -5'
10585 3' -59 NC_002687.1 + 40864 0.67 0.871387
Target:  5'- -uUCUCGggCaCCCUUCC-CGuCCCACa -3'
miRNA:   3'- cuAGAGCgaGcGGGAAGGaGC-GGGUG- -5'
10585 3' -59 NC_002687.1 + 262564 0.68 0.860142
Target:  5'- -uUCUCGC-CGUgCUUCCcgugcuucucucgcaUCGCCCAg -3'
miRNA:   3'- cuAGAGCGaGCGgGAAGG---------------AGCGGGUg -5'
10585 3' -59 NC_002687.1 + 169469 0.68 0.842413
Target:  5'- cGAUCgUCGagacgCGCCgUUCCUCGCCa-- -3'
miRNA:   3'- -CUAG-AGCga---GCGGgAAGGAGCGGgug -5'
10585 3' -59 NC_002687.1 + 122874 0.68 0.826897
Target:  5'- -uUCUUGgUCGCCUUccucUCCUCGCCaaGCa -3'
miRNA:   3'- cuAGAGCgAGCGGGA----AGGAGCGGg-UG- -5'
10585 3' -59 NC_002687.1 + 101587 0.69 0.810759
Target:  5'- uGUUUCGCgcuccgcgacgUCGUCCUUCUUCGCgacCCACu -3'
miRNA:   3'- cUAGAGCG-----------AGCGGGAAGGAGCG---GGUG- -5'
10585 3' -59 NC_002687.1 + 303468 0.71 0.666063
Target:  5'- --aCUUGUggacaUCGUCCUcuUCCUUGCCCGCa -3'
miRNA:   3'- cuaGAGCG-----AGCGGGA--AGGAGCGGGUG- -5'
10585 3' -59 NC_002687.1 + 199484 0.72 0.618145
Target:  5'- gGAUUgagUCGCUCGCCCUUCUUCaguGCuCUGCa -3'
miRNA:   3'- -CUAG---AGCGAGCGGGAAGGAG---CG-GGUG- -5'
10585 3' -59 NC_002687.1 + 324609 1.01 0.012285
Target:  5'- cGAUCcCGCUCGCCCUUCCUCGCCCACu -3'
miRNA:   3'- -CUAGaGCGAGCGGGAAGGAGCGGGUG- -5'
10585 3' -59 NC_002687.1 + 324226 1.01 0.012285
Target:  5'- cGAUCcCGCUCGCCCUUCCUCGCCCACu -3'
miRNA:   3'- -CUAGaGCGAGCGGGAAGGAGCGGGUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.