Results 1 - 20 of 22 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
10587 | 3' | -61.1 | NC_002687.1 | + | 133236 | 0.66 | 0.868981 |
Target: 5'- --cCCUGCUugacgugCGCCCaguugUCCUCGCCUc- -3' miRNA: 3'- cuaGGGCGA-------GCGGGa----AGGAGCGGGug -5' |
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10587 | 3' | -61.1 | NC_002687.1 | + | 133605 | 0.7 | 0.638685 |
Target: 5'- ---aCCGCgUUGCCCgccuugUCUUUGCCCGCg -3' miRNA: 3'- cuagGGCG-AGCGGGa-----AGGAGCGGGUG- -5' |
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10587 | 3' | -61.1 | NC_002687.1 | + | 85271 | 0.68 | 0.740921 |
Target: 5'- gGGUCCCGCUgGCCCacaaggCCUC-CCUg- -3' miRNA: 3'- -CUAGGGCGAgCGGGaa----GGAGcGGGug -5' |
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10587 | 3' | -61.1 | NC_002687.1 | + | 199484 | 0.68 | 0.740921 |
Target: 5'- gGAUUgagUCGCUCGCCCUUCUUCaguGCuCUGCa -3' miRNA: 3'- -CUAG---GGCGAGCGGGAAGGAG---CG-GGUG- -5' |
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10587 | 3' | -61.1 | NC_002687.1 | + | 101596 | 0.68 | 0.749872 |
Target: 5'- --cUCCGCgacgUCGUCCUUCUUCGCgacCCACu -3' miRNA: 3'- cuaGGGCG----AGCGGGAAGGAGCG---GGUG- -5' |
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10587 | 3' | -61.1 | NC_002687.1 | + | 72715 | 0.68 | 0.758736 |
Target: 5'- --cCCCGCUCGgCagcaucgUCCgucauaagCGCCCACg -3' miRNA: 3'- cuaGGGCGAGCgGga-----AGGa-------GCGGGUG- -5' |
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10587 | 3' | -61.1 | NC_002687.1 | + | 85814 | 0.68 | 0.758736 |
Target: 5'- uGGUCCCGCUgGUCCgcuggUCC-CGCuggucCCGCu -3' miRNA: 3'- -CUAGGGCGAgCGGGa----AGGaGCG-----GGUG- -5' |
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10587 | 3' | -61.1 | NC_002687.1 | + | 303468 | 0.68 | 0.767504 |
Target: 5'- --aCuuGUggacaUCGUCCUcuUCCUUGCCCGCa -3' miRNA: 3'- cuaGggCG-----AGCGGGA--AGGAGCGGGUG- -5' |
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10587 | 3' | -61.1 | NC_002687.1 | + | 150600 | 0.66 | 0.862748 |
Target: 5'- -uUCCCGCccUGUUCUUCCUC-CCCGu -3' miRNA: 3'- cuAGGGCGa-GCGGGAAGGAGcGGGUg -5' |
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10587 | 3' | -61.1 | NC_002687.1 | + | 323842 | 1.04 | 0.005228 |
Target: 5'- cGAUCUCGCUCGCCCUUCCUCGCCCACu -3' miRNA: 3'- -CUAGGGCGAGCGGGAAGGAGCGGGUG- -5' |
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10587 | 3' | -61.1 | NC_002687.1 | + | 324993 | 1.09 | 0.002422 |
Target: 5'- cGAUCCCGCUCGCCCUUCCUCGCCCACu -3' miRNA: 3'- -CUAGGGCGAGCGGGAAGGAGCGGGUG- -5' |
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10587 | 3' | -61.1 | NC_002687.1 | + | 324609 | 1.09 | 0.002422 |
Target: 5'- cGAUCCCGCUCGCCCUUCCUCGCCCACu -3' miRNA: 3'- -CUAGGGCGAGCGGGAAGGAGCGGGUG- -5' |
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10587 | 3' | -61.1 | NC_002687.1 | + | 293030 | 0.66 | 0.862748 |
Target: 5'- cGAUCCCGC-CGU--UUUUUCGCaCCACa -3' miRNA: 3'- -CUAGGGCGaGCGggAAGGAGCG-GGUG- -5' |
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10587 | 3' | -61.1 | NC_002687.1 | + | 324226 | 1.09 | 0.002422 |
Target: 5'- cGAUCCCGCUCGCCCUUCCUCGCCCACu -3' miRNA: 3'- -CUAGGGCGAGCGGGAAGGAGCGGGUG- -5' |
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10587 | 3' | -61.1 | NC_002687.1 | + | 203333 | 0.71 | 0.609389 |
Target: 5'- aGUCaCCGUgguggagUCaGaCCCUUCUUCGCCCACg -3' miRNA: 3'- cUAG-GGCG-------AG-C-GGGAAGGAGCGGGUG- -5' |
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10587 | 3' | -61.1 | NC_002687.1 | + | 134145 | 0.68 | 0.776169 |
Target: 5'- --cCCaCGCUUGCCacaaCCUCGuCCCACc -3' miRNA: 3'- cuaGG-GCGAGCGGgaa-GGAGC-GGGUG- -5' |
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10587 | 3' | -61.1 | NC_002687.1 | + | 242776 | 0.67 | 0.825607 |
Target: 5'- cGAUUuugCCGCUCGCCaCUUCUUCaUCUGCa -3' miRNA: 3'- -CUAG---GGCGAGCGG-GAAGGAGcGGGUG- -5' |
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10587 | 3' | -61.1 | NC_002687.1 | + | 325006 | 0.66 | 0.848388 |
Target: 5'- --cCCCGCUUGUCC-UCgCUUGCUgACa -3' miRNA: 3'- cuaGGGCGAGCGGGaAG-GAGCGGgUG- -5' |
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10587 | 3' | -61.1 | NC_002687.1 | + | 324239 | 0.66 | 0.848388 |
Target: 5'- --cCCCGCUUGUCC-UCgCUUGCUgACa -3' miRNA: 3'- cuaGGGCGAGCGGGaAG-GAGCGGgUG- -5' |
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10587 | 3' | -61.1 | NC_002687.1 | + | 173674 | 0.66 | 0.848388 |
Target: 5'- cGAgCCUGCUCuaCC-UCUgcugUCGCCCGCg -3' miRNA: 3'- -CUaGGGCGAGcgGGaAGG----AGCGGGUG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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