miRNA display CGI


Results 1 - 20 of 40 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10587 5' -55.5 NC_002687.1 + 3079 0.7 0.91476
Target:  5'- gCUGUUGGUGAGCc--GACGAGgGGGGa -3'
miRNA:   3'- -GACAGUCGUUCGcucCUGUUCgCCCC- -5'
10587 5' -55.5 NC_002687.1 + 10453 0.75 0.680692
Target:  5'- gUGUCGGau-GCGGGGACGgAGgGGGGu -3'
miRNA:   3'- gACAGUCguuCGCUCCUGU-UCgCCCC- -5'
10587 5' -55.5 NC_002687.1 + 18573 0.69 0.930476
Target:  5'- -cGUguGCAcGCGAuGGC-GGCGGGGg -3'
miRNA:   3'- gaCAguCGUuCGCUcCUGuUCGCCCC- -5'
10587 5' -55.5 NC_002687.1 + 20850 0.66 0.981084
Target:  5'- cCUGUUGG-AGGCGGGGGCGgaGGUGGa- -3'
miRNA:   3'- -GACAGUCgUUCGCUCCUGU--UCGCCcc -5'
10587 5' -55.5 NC_002687.1 + 37916 0.69 0.925454
Target:  5'- aUGUCGGCuGGUucgcuGAGuACGGGUGGGGa -3'
miRNA:   3'- gACAGUCGuUCG-----CUCcUGUUCGCCCC- -5'
10587 5' -55.5 NC_002687.1 + 38975 0.67 0.978363
Target:  5'- gUGUCgAGCGAGgGAaaGGGCAcggaugauuuccagGGCGGcGGa -3'
miRNA:   3'- gACAG-UCGUUCgCU--CCUGU--------------UCGCC-CC- -5'
10587 5' -55.5 NC_002687.1 + 44770 0.69 0.925454
Target:  5'- aUGaUgAGCAGGCGGGGAC--GUGGGa -3'
miRNA:   3'- gAC-AgUCGUUCGCUCCUGuuCGCCCc -5'
10587 5' -55.5 NC_002687.1 + 46600 0.66 0.986378
Target:  5'- -cGUCGGCAGGUacGA-GACAGGCcuGGGu -3'
miRNA:   3'- gaCAGUCGUUCG--CUcCUGUUCGc-CCC- -5'
10587 5' -55.5 NC_002687.1 + 73092 0.71 0.877575
Target:  5'- -gGUCAGCGugGGCGcuuaugacGGACGaugcugccgAGCGGGGg -3'
miRNA:   3'- gaCAGUCGU--UCGCu-------CCUGU---------UCGCCCC- -5'
10587 5' -55.5 NC_002687.1 + 86090 0.7 0.91476
Target:  5'- -gGcCAGCGgggccAGCG-GGGCcAGCGGGGc -3'
miRNA:   3'- gaCaGUCGU-----UCGCuCCUGuUCGCCCC- -5'
10587 5' -55.5 NC_002687.1 + 103525 0.68 0.948402
Target:  5'- ----gAGCGGGCGAcgGGAUGuguGCGGGGg -3'
miRNA:   3'- gacagUCGUUCGCU--CCUGUu--CGCCCC- -5'
10587 5' -55.5 NC_002687.1 + 127445 0.66 0.981084
Target:  5'- -cGUCAGCAAGUG-GGACAc-CGGa- -3'
miRNA:   3'- gaCAGUCGUUCGCuCCUGUucGCCcc -5'
10587 5' -55.5 NC_002687.1 + 173595 0.7 0.901398
Target:  5'- ----aGGCGgaGGCGGGGGCGgaggcggaggcggaGGCGGGGg -3'
miRNA:   3'- gacagUCGU--UCGCUCCUGU--------------UCGCCCC- -5'
10587 5' -55.5 NC_002687.1 + 201825 0.68 0.959627
Target:  5'- aUGUCucgcaauGCGGGCGcGGACuccAGCGGcGGc -3'
miRNA:   3'- gACAGu------CGUUCGCuCCUGu--UCGCC-CC- -5'
10587 5' -55.5 NC_002687.1 + 224165 0.67 0.969046
Target:  5'- gCUGgcggUGGCGguGGCGGGGGCAgugcugguGGCGGuGGc -3'
miRNA:   3'- -GACa---GUCGU--UCGCUCCUGU--------UCGCC-CC- -5'
10587 5' -55.5 NC_002687.1 + 225567 0.69 0.939869
Target:  5'- aCUGcUCGGgcAGCuGGGGCcgGAGCGGGGg -3'
miRNA:   3'- -GAC-AGUCguUCGcUCCUG--UUCGCCCC- -5'
10587 5' -55.5 NC_002687.1 + 242008 0.68 0.956092
Target:  5'- gUGUgGaGUGAGCGAGGugGGGgagaggaggcCGGGGg -3'
miRNA:   3'- gACAgU-CGUUCGCUCCugUUC----------GCCCC- -5'
10587 5' -55.5 NC_002687.1 + 245818 0.72 0.816301
Target:  5'- aUGUCAGagaggauCAAGCGAGGACuGGUGGa- -3'
miRNA:   3'- gACAGUC-------GUUCGCUCCUGuUCGCCcc -5'
10587 5' -55.5 NC_002687.1 + 280943 0.66 0.981084
Target:  5'- uUGaagCAGCGucGGCGGGGGCcuGGGUGGcGGc -3'
miRNA:   3'- gACa--GUCGU--UCGCUCCUG--UUCGCC-CC- -5'
10587 5' -55.5 NC_002687.1 + 281158 0.67 0.969046
Target:  5'- cCUGUUuugaaGGUAGGCGugGGGGCcgAGGCGGcGGa -3'
miRNA:   3'- -GACAG-----UCGUUCGC--UCCUG--UUCGCC-CC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.