miRNA display CGI


Results 1 - 20 of 22 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10589 3' -61.1 NC_002687.1 + 133236 0.66 0.868981
Target:  5'- --cCCUGCUugacgugCGCCCaguugUCCUCGCCUc- -3'
miRNA:   3'- cuaGGGCGA-------GCGGGa----AGGAGCGGGug -5'
10589 3' -61.1 NC_002687.1 + 300504 0.66 0.862748
Target:  5'- gGGUCaCCGCUacUCCaUCCcuUCGCCCGCu -3'
miRNA:   3'- -CUAG-GGCGAgcGGGaAGG--AGCGGGUG- -5'
10589 3' -61.1 NC_002687.1 + 150600 0.66 0.862748
Target:  5'- -uUCCCGCccUGUUCUUCCUC-CCCGu -3'
miRNA:   3'- cuAGGGCGa-GCGGGAAGGAGcGGGUg -5'
10589 3' -61.1 NC_002687.1 + 293030 0.66 0.862748
Target:  5'- cGAUCCCGC-CGU--UUUUUCGCaCCACa -3'
miRNA:   3'- -CUAGGGCGaGCGggAAGGAGCG-GGUG- -5'
10589 3' -61.1 NC_002687.1 + 325390 0.66 0.848388
Target:  5'- --cCCCGCUUGUCC-UCgCUUGCUgACa -3'
miRNA:   3'- cuaGGGCGAGCGGGaAG-GAGCGGgUG- -5'
10589 3' -61.1 NC_002687.1 + 324239 0.66 0.848388
Target:  5'- --cCCCGCUUGUCC-UCgCUUGCUgACa -3'
miRNA:   3'- cuaGGGCGAGCGGGaAG-GAGCGGgUG- -5'
10589 3' -61.1 NC_002687.1 + 325006 0.66 0.848388
Target:  5'- --cCCCGCUUGUCC-UCgCUUGCUgACa -3'
miRNA:   3'- cuaGGGCGAGCGGGaAG-GAGCGGgUG- -5'
10589 3' -61.1 NC_002687.1 + 173674 0.66 0.848388
Target:  5'- cGAgCCUGCUCuaCC-UCUgcugUCGCCCGCg -3'
miRNA:   3'- -CUaGGGCGAGcgGGaAGG----AGCGGGUG- -5'
10589 3' -61.1 NC_002687.1 + 242776 0.67 0.825607
Target:  5'- cGAUUuugCCGCUCGCCaCUUCUUCaUCUGCa -3'
miRNA:   3'- -CUAG---GGCGAGCGG-GAAGGAGcGGGUG- -5'
10589 3' -61.1 NC_002687.1 + 134145 0.68 0.776169
Target:  5'- --cCCaCGCUUGCCacaaCCUCGuCCCACc -3'
miRNA:   3'- cuaGG-GCGAGCGGgaa-GGAGC-GGGUG- -5'
10589 3' -61.1 NC_002687.1 + 303468 0.68 0.767504
Target:  5'- --aCuuGUggacaUCGUCCUcuUCCUUGCCCGCa -3'
miRNA:   3'- cuaGggCG-----AGCGGGA--AGGAGCGGGUG- -5'
10589 3' -61.1 NC_002687.1 + 85814 0.68 0.758736
Target:  5'- uGGUCCCGCUgGUCCgcuggUCC-CGCuggucCCGCu -3'
miRNA:   3'- -CUAGGGCGAgCGGGa----AGGaGCG-----GGUG- -5'
10589 3' -61.1 NC_002687.1 + 72715 0.68 0.758736
Target:  5'- --cCCCGCUCGgCagcaucgUCCgucauaagCGCCCACg -3'
miRNA:   3'- cuaGGGCGAGCgGga-----AGGa-------GCGGGUG- -5'
10589 3' -61.1 NC_002687.1 + 101596 0.68 0.749872
Target:  5'- --cUCCGCgacgUCGUCCUUCUUCGCgacCCACu -3'
miRNA:   3'- cuaGGGCG----AGCGGGAAGGAGCG---GGUG- -5'
10589 3' -61.1 NC_002687.1 + 85271 0.68 0.740921
Target:  5'- gGGUCCCGCUgGCCCacaaggCCUC-CCUg- -3'
miRNA:   3'- -CUAGGGCGAgCGGGaa----GGAGcGGGug -5'
10589 3' -61.1 NC_002687.1 + 199484 0.68 0.740921
Target:  5'- gGAUUgagUCGCUCGCCCUUCUUCaguGCuCUGCa -3'
miRNA:   3'- -CUAG---GGCGAGCGGGAAGGAG---CG-GGUG- -5'
10589 3' -61.1 NC_002687.1 + 133605 0.7 0.638685
Target:  5'- ---aCCGCgUUGCCCgccuugUCUUUGCCCGCg -3'
miRNA:   3'- cuagGGCG-AGCGGGa-----AGGAGCGGGUG- -5'
10589 3' -61.1 NC_002687.1 + 203333 0.71 0.609389
Target:  5'- aGUCaCCGUgguggagUCaGaCCCUUCUUCGCCCACg -3'
miRNA:   3'- cUAG-GGCG-------AG-C-GGGAAGGAGCGGGUG- -5'
10589 3' -61.1 NC_002687.1 + 323842 1.04 0.005228
Target:  5'- cGAUCUCGCUCGCCCUUCCUCGCCCACu -3'
miRNA:   3'- -CUAGGGCGAGCGGGAAGGAGCGGGUG- -5'
10589 3' -61.1 NC_002687.1 + 324609 1.09 0.002422
Target:  5'- cGAUCCCGCUCGCCCUUCCUCGCCCACu -3'
miRNA:   3'- -CUAGGGCGAGCGGGAAGGAGCGGGUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.