Results 1 - 20 of 40 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
10589 | 5' | -55.5 | NC_002687.1 | + | 304929 | 0.66 | 0.986378 |
Target: 5'- uUGUUGGCgAAGCuGAGGACGAGCc--- -3' miRNA: 3'- gACAGUCG-UUCG-CUCCUGUUCGcccc -5' |
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10589 | 5' | -55.5 | NC_002687.1 | + | 302692 | 0.66 | 0.982996 |
Target: 5'- -gGUCAGCucGGgGAGGGCGAaauuugguuucGCaGGGa -3' miRNA: 3'- gaCAGUCGu-UCgCUCCUGUU-----------CGcCCC- -5' |
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10589 | 5' | -55.5 | NC_002687.1 | + | 127445 | 0.66 | 0.981084 |
Target: 5'- -cGUCAGCAAGUG-GGACAc-CGGa- -3' miRNA: 3'- gaCAGUCGUUCGCuCCUGUucGCCcc -5' |
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10589 | 5' | -55.5 | NC_002687.1 | + | 20850 | 0.66 | 0.981084 |
Target: 5'- cCUGUUGG-AGGCGGGGGCGgaGGUGGa- -3' miRNA: 3'- -GACAGUCgUUCGCUCCUGU--UCGCCcc -5' |
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10589 | 5' | -55.5 | NC_002687.1 | + | 299498 | 0.66 | 0.982996 |
Target: 5'- -gGUCGGCAAG-GuGGuCAAGCGGc- -3' miRNA: 3'- gaCAGUCGUUCgCuCCuGUUCGCCcc -5' |
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10589 | 5' | -55.5 | NC_002687.1 | + | 301546 | 0.66 | 0.984758 |
Target: 5'- -gGUgAGCcucgacguacAGGCGAGGugccucggucuGCAAGCGGGc -3' miRNA: 3'- gaCAgUCG----------UUCGCUCC-----------UGUUCGCCCc -5' |
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10589 | 5' | -55.5 | NC_002687.1 | + | 280943 | 0.66 | 0.981084 |
Target: 5'- uUGaagCAGCGucGGCGGGGGCcuGGGUGGcGGc -3' miRNA: 3'- gACa--GUCGU--UCGCUCCUG--UUCGCC-CC- -5' |
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10589 | 5' | -55.5 | NC_002687.1 | + | 324191 | 0.66 | 0.986378 |
Target: 5'- ----gGGCGAGCGAGauCGGGCGGGc -3' miRNA: 3'- gacagUCGUUCGCUCcuGUUCGCCCc -5' |
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10589 | 5' | -55.5 | NC_002687.1 | + | 46600 | 0.66 | 0.986378 |
Target: 5'- -cGUCGGCAGGUacGA-GACAGGCcuGGGu -3' miRNA: 3'- gaCAGUCGUUCG--CUcCUGUUCGc-CCC- -5' |
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10589 | 5' | -55.5 | NC_002687.1 | + | 309499 | 0.66 | 0.984758 |
Target: 5'- -gGUC-GUGAGCGuGGugGA-CGGGGa -3' miRNA: 3'- gaCAGuCGUUCGCuCCugUUcGCCCC- -5' |
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10589 | 5' | -55.5 | NC_002687.1 | + | 303347 | 0.66 | 0.981084 |
Target: 5'- -aGUUAGCGagAGCGAGGu----CGGGGa -3' miRNA: 3'- gaCAGUCGU--UCGCUCCuguucGCCCC- -5' |
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10589 | 5' | -55.5 | NC_002687.1 | + | 281158 | 0.67 | 0.969046 |
Target: 5'- cCUGUUuugaaGGUAGGCGugGGGGCcgAGGCGGcGGa -3' miRNA: 3'- -GACAG-----UCGUUCGC--UCCUG--UUCGCC-CC- -5' |
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10589 | 5' | -55.5 | NC_002687.1 | + | 281847 | 0.67 | 0.974382 |
Target: 5'- cCUG--AGCAGGC-AGGGCGGGCGcgaGGGa -3' miRNA: 3'- -GACagUCGUUCGcUCCUGUUCGC---CCC- -5' |
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10589 | 5' | -55.5 | NC_002687.1 | + | 224165 | 0.67 | 0.969046 |
Target: 5'- gCUGgcggUGGCGguGGCGGGGGCAgugcugguGGCGGuGGc -3' miRNA: 3'- -GACa---GUCGU--UCGCUCCUGU--------UCGCC-CC- -5' |
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10589 | 5' | -55.5 | NC_002687.1 | + | 316020 | 0.67 | 0.976783 |
Target: 5'- aUGgu-GCcGGUGGGGACG-GUGGGGa -3' miRNA: 3'- gACaguCGuUCGCUCCUGUuCGCCCC- -5' |
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10589 | 5' | -55.5 | NC_002687.1 | + | 38975 | 0.67 | 0.978363 |
Target: 5'- gUGUCgAGCGAGgGAaaGGGCAcggaugauuuccagGGCGGcGGa -3' miRNA: 3'- gACAG-UCGUUCgCU--CCUGU--------------UCGCC-CC- -5' |
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10589 | 5' | -55.5 | NC_002687.1 | + | 201825 | 0.68 | 0.959627 |
Target: 5'- aUGUCucgcaauGCGGGCGcGGACuccAGCGGcGGc -3' miRNA: 3'- gACAGu------CGUUCGCuCCUGu--UCGCC-CC- -5' |
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10589 | 5' | -55.5 | NC_002687.1 | + | 242008 | 0.68 | 0.956092 |
Target: 5'- gUGUgGaGUGAGCGAGGugGGGgagaggaggcCGGGGg -3' miRNA: 3'- gACAgU-CGUUCGCUCCugUUC----------GCCCC- -5' |
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10589 | 5' | -55.5 | NC_002687.1 | + | 103525 | 0.68 | 0.948402 |
Target: 5'- ----gAGCGGGCGAcgGGAUGuguGCGGGGg -3' miRNA: 3'- gacagUCGUUCGCU--CCUGUu--CGCCCC- -5' |
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10589 | 5' | -55.5 | NC_002687.1 | + | 44770 | 0.69 | 0.925454 |
Target: 5'- aUGaUgAGCAGGCGGGGAC--GUGGGa -3' miRNA: 3'- gAC-AgUCGUUCGCUCCUGuuCGCCCc -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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