miRNA display CGI


Results 1 - 5 of 5 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
1059 5' -52.8 NC_000929.1 + 19026 1.06 0.001218
Target:  5'- gGUCUGCAUGGCAGAUAACGCAGCGAUg -3'
miRNA:   3'- -CAGACGUACCGUCUAUUGCGUCGCUA- -5'
1059 5' -52.8 NC_000929.1 + 22924 0.75 0.211077
Target:  5'- uUCUGCGUGauGCGGGUu-CGCAGCGAa -3'
miRNA:   3'- cAGACGUAC--CGUCUAuuGCGUCGCUa -5'
1059 5' -52.8 NC_000929.1 + 25549 0.66 0.693426
Target:  5'- ---gGCGUGGUgcAGGUAAUGCcAGCGGc -3'
miRNA:   3'- cagaCGUACCG--UCUAUUGCG-UCGCUa -5'
1059 5' -52.8 NC_000929.1 + 13371 0.68 0.564057
Target:  5'- -cCUGCGUGGUuugcaGGggGACGUGGUGAUu -3'
miRNA:   3'- caGACGUACCG-----UCuaUUGCGUCGCUA- -5'
1059 5' -52.8 NC_000929.1 + 31005 0.67 0.622793
Target:  5'- -aCUGC--GGCGGAUGauGCGCGGCa-- -3'
miRNA:   3'- caGACGuaCCGUCUAU--UGCGUCGcua -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.