Results 1 - 20 of 26 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
10590 | 3' | -58.9 | NC_002687.1 | + | 223467 | 0.67 | 0.89979 |
Target: 5'- gGUggUGCUGGCGgaGGUucgggaugcggUGGCGGGGGc -3' miRNA: 3'- gCAa-ACGACCGCa-CCG-----------GCCGCCCUUc -5' |
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10590 | 3' | -58.9 | NC_002687.1 | + | 324373 | 1.09 | 0.003696 |
Target: 5'- gCGUUUGCUGGCGUGGCCGGCGGGAAGg -3' miRNA: 3'- -GCAAACGACCGCACCGGCCGCCCUUC- -5' |
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10590 | 3' | -58.9 | NC_002687.1 | + | 324757 | 1.09 | 0.003696 |
Target: 5'- gCGUUUGCUGGCGUGGCCGGCGGGAAGg -3' miRNA: 3'- -GCAAACGACCGCACCGGCCGCCCUUC- -5' |
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10590 | 3' | -58.9 | NC_002687.1 | + | 325141 | 0.84 | 0.150664 |
Target: 5'- gCGUUUGCUGGCGUGGCCGGCc----- -3' miRNA: 3'- -GCAAACGACCGCACCGGCCGcccuuc -5' |
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10590 | 3' | -58.9 | NC_002687.1 | + | 95038 | 0.77 | 0.384505 |
Target: 5'- ---aUGUUGGCGgagacGGCCGGCGuGGAAGu -3' miRNA: 3'- gcaaACGACCGCa----CCGGCCGC-CCUUC- -5' |
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10590 | 3' | -58.9 | NC_002687.1 | + | 224164 | 0.72 | 0.642847 |
Target: 5'- ----cGCUGGCgGUGGCggUGGCGGGGGc -3' miRNA: 3'- gcaaaCGACCG-CACCG--GCCGCCCUUc -5' |
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10590 | 3' | -58.9 | NC_002687.1 | + | 329787 | 0.72 | 0.652379 |
Target: 5'- gCGUgcccGgUGGCGUGGCCGGaGGaGAGGc -3' miRNA: 3'- -GCAaa--CgACCGCACCGGCCgCC-CUUC- -5' |
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10590 | 3' | -58.9 | NC_002687.1 | + | 225661 | 0.69 | 0.806427 |
Target: 5'- aGgggGgUGGCGUGGgCGGCcGGGAc- -3' miRNA: 3'- gCaaaCgACCGCACCgGCCG-CCCUuc -5' |
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10590 | 3' | -58.9 | NC_002687.1 | + | 226219 | 0.69 | 0.806427 |
Target: 5'- aGgggGgUGGCGUGGgCGGCcGGGAc- -3' miRNA: 3'- gCaaaCgACCGCACCgGCCG-CCCUuc -5' |
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10590 | 3' | -58.9 | NC_002687.1 | + | 323990 | 1.09 | 0.003696 |
Target: 5'- gCGUUUGCUGGCGUGGCCGGCGGGAAGg -3' miRNA: 3'- -GCAAACGACCGCACCGGCCGCCCUUC- -5' |
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10590 | 3' | -58.9 | NC_002687.1 | + | 323606 | 1.09 | 0.003696 |
Target: 5'- gCGUUUGCUGGCGUGGCCGGCGGGAAGg -3' miRNA: 3'- -GCAAACGACCGCACCGGCCGCCCUUC- -5' |
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10590 | 3' | -58.9 | NC_002687.1 | + | 47413 | 0.67 | 0.891848 |
Target: 5'- aGUUUGCUGagaaguaggcagaaGCGuUGGCCGGaCGGuGGGu -3' miRNA: 3'- gCAAACGAC--------------CGC-ACCGGCC-GCC-CUUc -5' |
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10590 | 3' | -58.9 | NC_002687.1 | + | 24662 | 0.66 | 0.93197 |
Target: 5'- -------aGGUGUuGCCGGUGGGGAGa -3' miRNA: 3'- gcaaacgaCCGCAcCGGCCGCCCUUC- -5' |
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10590 | 3' | -58.9 | NC_002687.1 | + | 226405 | 0.66 | 0.93197 |
Target: 5'- aGgggGgUGGUGUGGgCGGCcGGGAc- -3' miRNA: 3'- gCaaaCgACCGCACCgGCCG-CCCUuc -5' |
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10590 | 3' | -58.9 | NC_002687.1 | + | 225847 | 0.66 | 0.93197 |
Target: 5'- aGgggGgUGGUGUGGgCGGCcGGGAc- -3' miRNA: 3'- gCaaaCgACCGCACCgGCCG-CCCUuc -5' |
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10590 | 3' | -58.9 | NC_002687.1 | + | 226033 | 0.66 | 0.93197 |
Target: 5'- aGgggGgUGGUGUGGgCGGCcGGGAc- -3' miRNA: 3'- gCaaaCgACCGCACCgGCCG-CCCUuc -5' |
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10590 | 3' | -58.9 | NC_002687.1 | + | 324772 | 0.66 | 0.93197 |
Target: 5'- uCGUUUGUcGGUGUGuaCGGCGGu--- -3' miRNA: 3'- -GCAAACGaCCGCACcgGCCGCCcuuc -5' |
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10590 | 3' | -58.9 | NC_002687.1 | + | 87219 | 0.66 | 0.927124 |
Target: 5'- uGUUgcucGCUGGUGcggGGgaGGCGGGAu- -3' miRNA: 3'- gCAAa---CGACCGCa--CCggCCGCCCUuc -5' |
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10590 | 3' | -58.9 | NC_002687.1 | + | 179433 | 0.68 | 0.845792 |
Target: 5'- ----aGCUGG-G-GGUgGGCGGGAGGa -3' miRNA: 3'- gcaaaCGACCgCaCCGgCCGCCCUUC- -5' |
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10590 | 3' | -58.9 | NC_002687.1 | + | 154785 | 0.69 | 0.822631 |
Target: 5'- gGUucUUGCUcGGCGUGGuuGuCGGGAu- -3' miRNA: 3'- gCA--AACGA-CCGCACCggCcGCCCUuc -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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