miRNA display CGI


Results 21 - 40 of 40 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10590 5' -55.4 NC_002687.1 + 159153 0.71 0.846102
Target:  5'- -gUUGUcGCCGCCGUGCaucACAUCGGCGAc -3'
miRNA:   3'- ugGACA-UGGCGGCAUG---UGUGGCUGUU- -5'
10590 5' -55.4 NC_002687.1 + 203552 0.68 0.943375
Target:  5'- gGCCUggucuaacGUGCUcagGUCGUAUGCACCGGCGg -3'
miRNA:   3'- -UGGA--------CAUGG---CGGCAUGUGUGGCUGUu -5'
10590 5' -55.4 NC_002687.1 + 219185 0.67 0.965653
Target:  5'- uCUUGUACUGCUGUACAUACaaaaGAgAGu -3'
miRNA:   3'- uGGACAUGGCGGCAUGUGUGg---CUgUU- -5'
10590 5' -55.4 NC_002687.1 + 253488 0.72 0.813913
Target:  5'- gACCUGUgugcGCUGaCCGUACACACgGAuCAGu -3'
miRNA:   3'- -UGGACA----UGGC-GGCAUGUGUGgCU-GUU- -5'
10590 5' -55.4 NC_002687.1 + 272621 0.68 0.951642
Target:  5'- cCCUG-ACCGUCGaugACGCCGGCGAg -3'
miRNA:   3'- uGGACaUGGCGGCaugUGUGGCUGUU- -5'
10590 5' -55.4 NC_002687.1 + 276160 0.67 0.965653
Target:  5'- aACgUGaagGCCGCgGU-CGCGCCGGCGu -3'
miRNA:   3'- -UGgACa--UGGCGgCAuGUGUGGCUGUu -5'
10590 5' -55.4 NC_002687.1 + 315824 0.7 0.888899
Target:  5'- cGCCggGUGCCGCCGccGCAC-CCGAa-- -3'
miRNA:   3'- -UGGa-CAUGGCGGCa-UGUGuGGCUguu -5'
10590 5' -55.4 NC_002687.1 + 317456 0.67 0.971463
Target:  5'- cACCagGUuCCGCCGccacaugGC-CACCGACAAc -3'
miRNA:   3'- -UGGa-CAuGGCGGCa------UGuGUGGCUGUU- -5'
10590 5' -55.4 NC_002687.1 + 323640 1.06 0.010653
Target:  5'- gACCUGUACCGCCGUACACACCGACAAa -3'
miRNA:   3'- -UGGACAUGGCGGCAUGUGUGGCUGUU- -5'
10590 5' -55.4 NC_002687.1 + 323970 0.67 0.974086
Target:  5'- aACCUuc-CCGCCGgcCACGCCaGCAAa -3'
miRNA:   3'- -UGGAcauGGCGGCauGUGUGGcUGUU- -5'
10590 5' -55.4 NC_002687.1 + 324024 1.06 0.010653
Target:  5'- gACCUGUACCGCCGUACACACCGACAAa -3'
miRNA:   3'- -UGGACAUGGCGGCAUGUGUGGCUGUU- -5'
10590 5' -55.4 NC_002687.1 + 324354 0.67 0.974086
Target:  5'- aACCUuc-CCGCCGgcCACGCCaGCAAa -3'
miRNA:   3'- -UGGAcauGGCGGCauGUGUGGcUGUU- -5'
10590 5' -55.4 NC_002687.1 + 324407 1.06 0.010653
Target:  5'- gACCUGUACCGCCGUACACACCGACAAa -3'
miRNA:   3'- -UGGACAUGGCGGCAUGUGUGGCUGUU- -5'
10590 5' -55.4 NC_002687.1 + 324737 0.67 0.974086
Target:  5'- aACCUuc-CCGCCGgcCACGCCaGCAAa -3'
miRNA:   3'- -UGGAcauGGCGGCauGUGUGGcUGUU- -5'
10590 5' -55.4 NC_002687.1 + 324791 1.06 0.010653
Target:  5'- gACCUGUACCGCCGUACACACCGACAAa -3'
miRNA:   3'- -UGGACAUGGCGGCAUGUGUGGCUGUU- -5'
10590 5' -55.4 NC_002687.1 + 325121 0.67 0.974086
Target:  5'- aACCUuc-CCGCCGgcCACGCCaGCAAa -3'
miRNA:   3'- -UGGAcauGGCGGCauGUGUGGcUGUU- -5'
10590 5' -55.4 NC_002687.1 + 325159 0.98 0.034158
Target:  5'- gGCCUGUACCGCCGUACcCACCGACAAa -3'
miRNA:   3'- -UGGACAUGGCGGCAUGuGUGGCUGUU- -5'
10590 5' -55.4 NC_002687.1 + 325767 0.71 0.867668
Target:  5'- gGCgUGUAuugcucuCCGCCGU-UGCACCGACAGc -3'
miRNA:   3'- -UGgACAU-------GGCGGCAuGUGUGGCUGUU- -5'
10590 5' -55.4 NC_002687.1 + 326700 0.72 0.805467
Target:  5'- uCCgagcagGuuGCCGUACACACCGACu- -3'
miRNA:   3'- uGGaca---UggCGGCAUGUGUGGCUGuu -5'
10590 5' -55.4 NC_002687.1 + 332055 0.7 0.875424
Target:  5'- gACCUGUGCCGgaUCGUgggucguggaGC-CACCGACAc -3'
miRNA:   3'- -UGGACAUGGC--GGCA----------UGuGUGGCUGUu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.