miRNA display CGI


Results 21 - 40 of 40 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10591 5' -55.5 NC_002687.1 + 18573 0.69 0.930476
Target:  5'- -cGUguGCAcGCGAuGGC-GGCGGGGg -3'
miRNA:   3'- gaCAguCGUuCGCUcCUGuUCGCCCC- -5'
10591 5' -55.5 NC_002687.1 + 44770 0.69 0.925454
Target:  5'- aUGaUgAGCAGGCGGGGAC--GUGGGa -3'
miRNA:   3'- gAC-AgUCGUUCGCUCCUGuuCGCCCc -5'
10591 5' -55.5 NC_002687.1 + 37916 0.69 0.925454
Target:  5'- aUGUCGGCuGGUucgcuGAGuACGGGUGGGGa -3'
miRNA:   3'- gACAGUCGuUCG-----CUCcUGUUCGCCCC- -5'
10591 5' -55.5 NC_002687.1 + 3079 0.7 0.91476
Target:  5'- gCUGUUGGUGAGCc--GACGAGgGGGGa -3'
miRNA:   3'- -GACAGUCGUUCGcucCUGUUCgCCCC- -5'
10591 5' -55.5 NC_002687.1 + 86090 0.7 0.91476
Target:  5'- -gGcCAGCGgggccAGCG-GGGCcAGCGGGGc -3'
miRNA:   3'- gaCaGUCGU-----UCGCuCCUGuUCGCCCC- -5'
10591 5' -55.5 NC_002687.1 + 173595 0.7 0.901398
Target:  5'- ----aGGCGgaGGCGGGGGCGgaggcggaggcggaGGCGGGGg -3'
miRNA:   3'- gacagUCGU--UCGCUCCUGU--------------UCGCCCC- -5'
10591 5' -55.5 NC_002687.1 + 281791 0.7 0.897108
Target:  5'- gUGUgGGaacGGCGGGGGCAGGggcCGGGGc -3'
miRNA:   3'- gACAgUCgu-UCGCUCCUGUUC---GCCCC- -5'
10591 5' -55.5 NC_002687.1 + 73092 0.71 0.877575
Target:  5'- -gGUCAGCGugGGCGcuuaugacGGACGaugcugccgAGCGGGGg -3'
miRNA:   3'- gaCAGUCGU--UCGCu-------CCUGU---------UCGCCCC- -5'
10591 5' -55.5 NC_002687.1 + 320097 0.72 0.816301
Target:  5'- aUGUCAGagaggauCAAGCGAGGACuGGUGGa- -3'
miRNA:   3'- gACAGUC-------GUUCGCUCCUGuUCGCCcc -5'
10591 5' -55.5 NC_002687.1 + 245818 0.72 0.816301
Target:  5'- aUGUCAGagaggauCAAGCGAGGACuGGUGGa- -3'
miRNA:   3'- gACAGUC-------GUUCGCUCCUGuUCGCCcc -5'
10591 5' -55.5 NC_002687.1 + 328812 0.73 0.783041
Target:  5'- gCUGacaUCGGagguGGUGAGGAC-AGCGGGGu -3'
miRNA:   3'- -GAC---AGUCgu--UCGCUCCUGuUCGCCCC- -5'
10591 5' -55.5 NC_002687.1 + 324588 0.73 0.765231
Target:  5'- -aGUgGGCGAG-GaAGGGCGAGCGGGa -3'
miRNA:   3'- gaCAgUCGUUCgC-UCCUGUUCGCCCc -5'
10591 5' -55.5 NC_002687.1 + 324971 0.73 0.765231
Target:  5'- -aGUgGGCGAG-GaAGGGCGAGCGGGa -3'
miRNA:   3'- gaCAgUCGUUCgC-UCCUGUUCGCCCc -5'
10591 5' -55.5 NC_002687.1 + 325355 0.73 0.765231
Target:  5'- -aGUgGGCGAG-GaAGGGCGAGCGGGa -3'
miRNA:   3'- gaCAgUCGUUCgC-UCCUGUUCGCCCc -5'
10591 5' -55.5 NC_002687.1 + 308863 0.75 0.690334
Target:  5'- gCUGcUCGGU-GGUGGGGGCGucAGCGGGGg -3'
miRNA:   3'- -GAC-AGUCGuUCGCUCCUGU--UCGCCCC- -5'
10591 5' -55.5 NC_002687.1 + 10453 0.75 0.680692
Target:  5'- gUGUCGGau-GCGGGGACGgAGgGGGGu -3'
miRNA:   3'- gACAGUCguuCGCUCCUGU-UCgCCCC- -5'
10591 5' -55.5 NC_002687.1 + 323878 1.11 0.005528
Target:  5'- uCUGUCAGCAAGCGAGGACAAGCGGGGg -3'
miRNA:   3'- -GACAGUCGUUCGCUCCUGUUCGCCCC- -5'
10591 5' -55.5 NC_002687.1 + 324262 1.11 0.005528
Target:  5'- uCUGUCAGCAAGCGAGGACAAGCGGGGg -3'
miRNA:   3'- -GACAGUCGUUCGCUCCUGUUCGCCCC- -5'
10591 5' -55.5 NC_002687.1 + 324645 1.11 0.005528
Target:  5'- uCUGUCAGCAAGCGAGGACAAGCGGGGg -3'
miRNA:   3'- -GACAGUCGUUCGCUCCUGUUCGCCCC- -5'
10591 5' -55.5 NC_002687.1 + 325029 1.11 0.005528
Target:  5'- uCUGUCAGCAAGCGAGGACAAGCGGGGg -3'
miRNA:   3'- -GACAGUCGUUCGCUCCUGUUCGCCCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.