miRNA display CGI


Results 1 - 19 of 19 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10592 3' -60.1 NC_002687.1 + 102581 0.66 0.888921
Target:  5'- --gGCcGGacaGaaaUGGUCGGCCUuGUACCGg -3'
miRNA:   3'- aaaCGaCCg--C---ACCGGCCGGA-CAUGGC- -5'
10592 3' -60.1 NC_002687.1 + 224134 0.66 0.882448
Target:  5'- --cGCUGGCgGUGGCggUGGCgCUGgcGCUGg -3'
miRNA:   3'- aaaCGACCG-CACCG--GCCG-GACa-UGGC- -5'
10592 3' -60.1 NC_002687.1 + 313385 0.66 0.875778
Target:  5'- --aGUUGcCGUGGCCGGUCgcgugACCGc -3'
miRNA:   3'- aaaCGACcGCACCGGCCGGaca--UGGC- -5'
10592 3' -60.1 NC_002687.1 + 270555 0.66 0.875778
Target:  5'- gUUGCcGGCGaGGUCGGCCgccugGUAUUu -3'
miRNA:   3'- aAACGaCCGCaCCGGCCGGa----CAUGGc -5'
10592 3' -60.1 NC_002687.1 + 18638 0.66 0.868916
Target:  5'- -gUGUgaaGGCaGUGGCCaggaGGCCUGU-CCa -3'
miRNA:   3'- aaACGa--CCG-CACCGG----CCGGACAuGGc -5'
10592 3' -60.1 NC_002687.1 + 181644 0.66 0.854636
Target:  5'- cUUUGCUGGCuuuGCUGGCUU-UACCGg -3'
miRNA:   3'- -AAACGACCGcacCGGCCGGAcAUGGC- -5'
10592 3' -60.1 NC_002687.1 + 136063 0.67 0.847227
Target:  5'- -aUGaaaGGCGUGGCCGGCacgGggaagucgACCGu -3'
miRNA:   3'- aaACga-CCGCACCGGCCGga-Ca-------UGGC- -5'
10592 3' -60.1 NC_002687.1 + 279642 0.67 0.81593
Target:  5'- ---uCUGGUG-GGCCGGUg-GUGCCGg -3'
miRNA:   3'- aaacGACCGCaCCGGCCGgaCAUGGC- -5'
10592 3' -60.1 NC_002687.1 + 329794 0.68 0.790892
Target:  5'- --cGgUGGCGUGGCCGGaggagagGCCGc -3'
miRNA:   3'- aaaCgACCGCACCGGCCggaca--UGGC- -5'
10592 3' -60.1 NC_002687.1 + 46773 0.69 0.74674
Target:  5'- -cUGaaGGCGUGGCUgcaGGCCggcuugGUACCu -3'
miRNA:   3'- aaACgaCCGCACCGG---CCGGa-----CAUGGc -5'
10592 3' -60.1 NC_002687.1 + 181615 0.69 0.737613
Target:  5'- cUUUGCUGGCuuuGCCGGCUUuuUGCCGg -3'
miRNA:   3'- -AAACGACCGcacCGGCCGGAc-AUGGC- -5'
10592 3' -60.1 NC_002687.1 + 316046 0.69 0.719126
Target:  5'- --gGCUGGCGgugGuGCCGaugguGCCgaugGUGCCGg -3'
miRNA:   3'- aaaCGACCGCa--C-CGGC-----CGGa---CAUGGC- -5'
10592 3' -60.1 NC_002687.1 + 75403 0.7 0.69092
Target:  5'- gUUUGCUGGUcuccacuaccGUcGUCGGUCUGUGCCu -3'
miRNA:   3'- -AAACGACCG----------CAcCGGCCGGACAUGGc -5'
10592 3' -60.1 NC_002687.1 + 159743 0.72 0.557179
Target:  5'- -cUGUcGGCGUcGUCGGCUUGUGCCa -3'
miRNA:   3'- aaACGaCCGCAcCGGCCGGACAUGGc -5'
10592 3' -60.1 NC_002687.1 + 324759 0.85 0.106945
Target:  5'- gUUUGCUGGCGUGGCCGgcgggaagguuuauaGaCCUGUACCGc -3'
miRNA:   3'- -AAACGACCGCACCGGC---------------C-GGACAUGGC- -5'
10592 3' -60.1 NC_002687.1 + 324375 0.85 0.106945
Target:  5'- gUUUGCUGGCGUGGCCGgcgggaagguuuauaGaCCUGUACCGc -3'
miRNA:   3'- -AAACGACCGCACCGGC---------------C-GGACAUGGC- -5'
10592 3' -60.1 NC_002687.1 + 323992 0.85 0.106945
Target:  5'- gUUUGCUGGCGUGGCCGgcgggaagguuuauaGaCCUGUACCGc -3'
miRNA:   3'- -AAACGACCGCACCGGC---------------C-GGACAUGGC- -5'
10592 3' -60.1 NC_002687.1 + 323608 0.85 0.106945
Target:  5'- gUUUGCUGGCGUGGCCGgcgggaagguuuauaGaCCUGUACCGc -3'
miRNA:   3'- -AAACGACCGCACCGGC---------------C-GGACAUGGC- -5'
10592 3' -60.1 NC_002687.1 + 325143 1.05 0.004381
Target:  5'- gUUUGCUGGCGUGGCCGGCCUGUACCGc -3'
miRNA:   3'- -AAACGACCGCACCGGCCGGACAUGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.