Results 81 - 88 of 88 are showing below:
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| ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position |
R_P_ratio #
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P value |
| Predicted miRNA align pattern | |||||||
| 10592 | 5' | -52 | NC_002687.1 | + | 84903 | 0.66 | 0.998829 |
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Target: 5'- cACCGACGgcacGACGAugcCGGugACGUCu--- -3' miRNA: 3'- -UGGCUGU----UUGCU---GCCugUGCGGuaac -5' |
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| 10592 | 5' | -52 | NC_002687.1 | + | 2393 | 0.66 | 0.998829 |
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Target: 5'- -gCGACGAACGuaGCGGACgACGCg---- -3' miRNA: 3'- ugGCUGUUUGC--UGCCUG-UGCGguaac -5' |
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| 10592 | 5' | -52 | NC_002687.1 | + | 271758 | 0.66 | 0.999026 |
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Target: 5'- gGCCGAguCAGGugcauCGACGGGCGaGCuCAUUGa -3' miRNA: 3'- -UGGCU--GUUU-----GCUGCCUGUgCG-GUAAC- -5' |
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| 10592 | 5' | -52 | NC_002687.1 | + | 9892 | 0.66 | 0.999026 |
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Target: 5'- cACUGACGccgGACuuGACGGAUGCGUggcgCAUUGg -3' miRNA: 3'- -UGGCUGU---UUG--CUGCCUGUGCG----GUAAC- -5' |
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| 10592 | 5' | -52 | NC_002687.1 | + | 137348 | 0.66 | 0.999195 |
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Target: 5'- gUCGGCGucgaaGACGGGCugGCCc--- -3' miRNA: 3'- uGGCUGUuug--CUGCCUGugCGGuaac -5' |
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| 10592 | 5' | -52 | NC_002687.1 | + | 118181 | 0.66 | 0.999195 |
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Target: 5'- gUCGAacgaGGACGACGGugcCGCGCCu--- -3' miRNA: 3'- uGGCUg---UUUGCUGCCu--GUGCGGuaac -5' |
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| 10592 | 5' | -52 | NC_002687.1 | + | 212119 | 0.66 | 0.999195 |
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Target: 5'- gGCCGACGAcgGCGACGaAUACaaaGCCGa-- -3' miRNA: 3'- -UGGCUGUU--UGCUGCcUGUG---CGGUaac -5' |
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| 10592 | 5' | -52 | NC_002687.1 | + | 322852 | 0.66 | 0.999338 |
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Target: 5'- gAUCGACgGAGCGACGGcUGCGCgAUc- -3' miRNA: 3'- -UGGCUG-UUUGCUGCCuGUGCGgUAac -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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