miRNA display CGI


Results 41 - 60 of 88 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10592 5' -52 NC_002687.1 + 259438 0.68 0.994208
Target:  5'- cGCCGGCGccAACGACacguauguGGugcaGCACGCCAUc- -3'
miRNA:   3'- -UGGCUGU--UUGCUG--------CC----UGUGCGGUAac -5'
10592 5' -52 NC_002687.1 + 8865 0.68 0.994208
Target:  5'- uCCGgaaGCGuucGCGGCGGAC-CGCCGUa- -3'
miRNA:   3'- uGGC---UGUu--UGCUGCCUGuGCGGUAac -5'
10592 5' -52 NC_002687.1 + 208829 0.68 0.994208
Target:  5'- gACCGu--GACGACGGugGUGCCGa-- -3'
miRNA:   3'- -UGGCuguUUGCUGCCugUGCGGUaac -5'
10592 5' -52 NC_002687.1 + 123016 0.68 0.994208
Target:  5'- gGCCG-CGAuuuccACGAgCGGaaGCAUGCCGUUGu -3'
miRNA:   3'- -UGGCuGUU-----UGCU-GCC--UGUGCGGUAAC- -5'
10592 5' -52 NC_002687.1 + 296703 0.68 0.994971
Target:  5'- gGuuGACGAGCGAuCGGGCAUGguuuccgaCAUUGa -3'
miRNA:   3'- -UggCUGUUUGCU-GCCUGUGCg-------GUAAC- -5'
10592 5' -52 NC_002687.1 + 109380 0.68 0.994971
Target:  5'- cGCCGACAAGaucaGACGcaaGACGCGgCAgUUGg -3'
miRNA:   3'- -UGGCUGUUUg---CUGC---CUGUGCgGU-AAC- -5'
10592 5' -52 NC_002687.1 + 61441 0.68 0.995649
Target:  5'- gAUCGGCAGcACGGacguggagacCGGACGCGUCGUg- -3'
miRNA:   3'- -UGGCUGUU-UGCU----------GCCUGUGCGGUAac -5'
10592 5' -52 NC_002687.1 + 39145 0.68 0.995649
Target:  5'- cGCCGGCuGugGGCaGGACGagguaGUCGUUGu -3'
miRNA:   3'- -UGGCUGuUugCUG-CCUGUg----CGGUAAC- -5'
10592 5' -52 NC_002687.1 + 114628 0.68 0.995649
Target:  5'- aGCCGACGuccccgugauCGACGGGCGCG--AUUGa -3'
miRNA:   3'- -UGGCUGUuu--------GCUGCCUGUGCggUAAC- -5'
10592 5' -52 NC_002687.1 + 18486 0.68 0.995649
Target:  5'- -gUGugAAACGGCGGACGaGCUAUa- -3'
miRNA:   3'- ugGCugUUUGCUGCCUGUgCGGUAac -5'
10592 5' -52 NC_002687.1 + 154992 0.68 0.996251
Target:  5'- gGCCGACAcAACGgccuggugaGCGGAUuuuugaacaaagACGCCGUUc -3'
miRNA:   3'- -UGGCUGU-UUGC---------UGCCUG------------UGCGGUAAc -5'
10592 5' -52 NC_002687.1 + 117576 0.68 0.996251
Target:  5'- cACCGGCGAugGCGACGccuacaccCGCGCCGggugUGa -3'
miRNA:   3'- -UGGCUGUU--UGCUGCcu------GUGCGGUa---AC- -5'
10592 5' -52 NC_002687.1 + 254358 0.68 0.996251
Target:  5'- uUCGGCGGAgGGCGGACugcGCGUCGg-- -3'
miRNA:   3'- uGGCUGUUUgCUGCCUG---UGCGGUaac -5'
10592 5' -52 NC_002687.1 + 181680 0.67 0.996783
Target:  5'- uGCCGAU--GCGAugUGGACGCGCuCAc-- -3'
miRNA:   3'- -UGGCUGuuUGCU--GCCUGUGCG-GUaac -5'
10592 5' -52 NC_002687.1 + 154976 0.67 0.996978
Target:  5'- cCCGACAacagcucuguuccaaAugguACGACGGugACGCUGUUu -3'
miRNA:   3'- uGGCUGU---------------U----UGCUGCCugUGCGGUAAc -5'
10592 5' -52 NC_002687.1 + 90066 0.67 0.997251
Target:  5'- cACCGACcu-CGGCGGAgACaCCGUg- -3'
miRNA:   3'- -UGGCUGuuuGCUGCCUgUGcGGUAac -5'
10592 5' -52 NC_002687.1 + 128978 0.67 0.997251
Target:  5'- gAUCGACGAuguagcuaGCGgaucggagGCGGGCGCGCguUUGa -3'
miRNA:   3'- -UGGCUGUU--------UGC--------UGCCUGUGCGguAAC- -5'
10592 5' -52 NC_002687.1 + 208590 0.67 0.997661
Target:  5'- -gCGAC-GACGACGGugGUGCCGa-- -3'
miRNA:   3'- ugGCUGuUUGCUGCCugUGCGGUaac -5'
10592 5' -52 NC_002687.1 + 104727 0.67 0.997661
Target:  5'- -aCGACGAguACGugGGuggcCACGCCGc-- -3'
miRNA:   3'- ugGCUGUU--UGCugCCu---GUGCGGUaac -5'
10592 5' -52 NC_002687.1 + 174825 0.67 0.998019
Target:  5'- gGCUGACGAcucCGACGGACAauacgUGCCc--- -3'
miRNA:   3'- -UGGCUGUUu--GCUGCCUGU-----GCGGuaac -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.