miRNA display CGI


Results 41 - 60 of 88 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10592 5' -52 NC_002687.1 + 145677 0.66 0.999026
Target:  5'- uCCGGCcccUGGCGGACugcuGCGCCGUc- -3'
miRNA:   3'- uGGCUGuuuGCUGCCUG----UGCGGUAac -5'
10592 5' -52 NC_002687.1 + 154976 0.67 0.996978
Target:  5'- cCCGACAacagcucuguuccaaAugguACGACGGugACGCUGUUu -3'
miRNA:   3'- uGGCUGU---------------U----UGCUGCCugUGCGGUAAc -5'
10592 5' -52 NC_002687.1 + 154992 0.68 0.996251
Target:  5'- gGCCGACAcAACGgccuggugaGCGGAUuuuugaacaaagACGCCGUUc -3'
miRNA:   3'- -UGGCUGU-UUGC---------UGCCUG------------UGCGGUAAc -5'
10592 5' -52 NC_002687.1 + 157265 0.72 0.950237
Target:  5'- uACCGAUGAgcGCGACGGgaaGCGCCGa-- -3'
miRNA:   3'- -UGGCUGUU--UGCUGCCug-UGCGGUaac -5'
10592 5' -52 NC_002687.1 + 157789 0.66 0.999195
Target:  5'- uCUGGuCGAGCGACGcGAagaACGCCAa-- -3'
miRNA:   3'- uGGCU-GUUUGCUGC-CUg--UGCGGUaac -5'
10592 5' -52 NC_002687.1 + 158808 0.75 0.871949
Target:  5'- -gCGGCGAcaACGACGGAC-CGCCGUc- -3'
miRNA:   3'- ugGCUGUU--UGCUGCCUGuGCGGUAac -5'
10592 5' -52 NC_002687.1 + 159177 0.75 0.871949
Target:  5'- gACCGGCGgcGACGGCGGuC-CGUCGUUGu -3'
miRNA:   3'- -UGGCUGU--UUGCUGCCuGuGCGGUAAC- -5'
10592 5' -52 NC_002687.1 + 165256 0.66 0.998829
Target:  5'- uCCGACGGACGAUacguuccaguGGACuuCGCCu--- -3'
miRNA:   3'- uGGCUGUUUGCUG----------CCUGu-GCGGuaac -5'
10592 5' -52 NC_002687.1 + 169462 0.68 0.993356
Target:  5'- aGCUGACcGAuCGuCGaGACGCGCCGUUc -3'
miRNA:   3'- -UGGCUGuUU-GCuGC-CUGUGCGGUAAc -5'
10592 5' -52 NC_002687.1 + 174825 0.67 0.998019
Target:  5'- gGCUGACGAcucCGACGGACAauacgUGCCc--- -3'
miRNA:   3'- -UGGCUGUUu--GCUGCCUGU-----GCGGuaac -5'
10592 5' -52 NC_002687.1 + 181680 0.67 0.996783
Target:  5'- uGCCGAU--GCGAugUGGACGCGCuCAc-- -3'
miRNA:   3'- -UGGCUGuuUGCU--GCCUGUGCG-GUaac -5'
10592 5' -52 NC_002687.1 + 200116 0.88 0.285487
Target:  5'- uGCCGGC-GACGACGGccGCGCGCCGUUGa -3'
miRNA:   3'- -UGGCUGuUUGCUGCC--UGUGCGGUAAC- -5'
10592 5' -52 NC_002687.1 + 200548 0.68 0.993356
Target:  5'- aGCCGACGucGACGcucggGCGGAagacggcauCACGCCuUUGa -3'
miRNA:   3'- -UGGCUGU--UUGC-----UGCCU---------GUGCGGuAAC- -5'
10592 5' -52 NC_002687.1 + 205445 0.76 0.817514
Target:  5'- aACUGGCGGuguCGugGGACACGCUGUg- -3'
miRNA:   3'- -UGGCUGUUu--GCugCCUGUGCGGUAac -5'
10592 5' -52 NC_002687.1 + 208590 0.67 0.997661
Target:  5'- -gCGAC-GACGACGGugGUGCCGa-- -3'
miRNA:   3'- ugGCUGuUUGCUGCCugUGCGGUaac -5'
10592 5' -52 NC_002687.1 + 208829 0.68 0.994208
Target:  5'- gACCGu--GACGACGGugGUGCCGa-- -3'
miRNA:   3'- -UGGCuguUUGCUGCCugUGCGGUaac -5'
10592 5' -52 NC_002687.1 + 212119 0.66 0.999195
Target:  5'- gGCCGACGAcgGCGACGaAUACaaaGCCGa-- -3'
miRNA:   3'- -UGGCUGUU--UGCUGCcUGUG---CGGUaac -5'
10592 5' -52 NC_002687.1 + 224095 0.68 0.993962
Target:  5'- uGCUGGCGGACGuucgggacgcggugGCGGugGCGCUg--- -3'
miRNA:   3'- -UGGCUGUUUGC--------------UGCCugUGCGGuaac -5'
10592 5' -52 NC_002687.1 + 224134 0.68 0.993356
Target:  5'- cGCUGGCGGugG-CGGugGCGCUg--- -3'
miRNA:   3'- -UGGCUGUUugCuGCCugUGCGGuaac -5'
10592 5' -52 NC_002687.1 + 226667 0.67 0.998019
Target:  5'- cAUCGGCGAggaaggauGCGugGaGGCAUGCCGg-- -3'
miRNA:   3'- -UGGCUGUU--------UGCugC-CUGUGCGGUaac -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.