miRNA display CGI


Results 41 - 60 of 88 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10592 5' -52 NC_002687.1 + 165256 0.66 0.998829
Target:  5'- uCCGACGGACGAUacguuccaguGGACuuCGCCu--- -3'
miRNA:   3'- uGGCUGUUUGCUG----------CCUGu-GCGGuaac -5'
10592 5' -52 NC_002687.1 + 159177 0.75 0.871949
Target:  5'- gACCGGCGgcGACGGCGGuC-CGUCGUUGu -3'
miRNA:   3'- -UGGCUGU--UUGCUGCCuGuGCGGUAAC- -5'
10592 5' -52 NC_002687.1 + 158808 0.75 0.871949
Target:  5'- -gCGGCGAcaACGACGGAC-CGCCGUc- -3'
miRNA:   3'- ugGCUGUU--UGCUGCCUGuGCGGUAac -5'
10592 5' -52 NC_002687.1 + 157789 0.66 0.999195
Target:  5'- uCUGGuCGAGCGACGcGAagaACGCCAa-- -3'
miRNA:   3'- uGGCU-GUUUGCUGC-CUg--UGCGGUaac -5'
10592 5' -52 NC_002687.1 + 157265 0.72 0.950237
Target:  5'- uACCGAUGAgcGCGACGGgaaGCGCCGa-- -3'
miRNA:   3'- -UGGCUGUU--UGCUGCCug-UGCGGUaac -5'
10592 5' -52 NC_002687.1 + 154992 0.68 0.996251
Target:  5'- gGCCGACAcAACGgccuggugaGCGGAUuuuugaacaaagACGCCGUUc -3'
miRNA:   3'- -UGGCUGU-UUGC---------UGCCUG------------UGCGGUAAc -5'
10592 5' -52 NC_002687.1 + 154976 0.67 0.996978
Target:  5'- cCCGACAacagcucuguuccaaAugguACGACGGugACGCUGUUu -3'
miRNA:   3'- uGGCUGU---------------U----UGCUGCCugUGCGGUAAc -5'
10592 5' -52 NC_002687.1 + 145677 0.66 0.999026
Target:  5'- uCCGGCcccUGGCGGACugcuGCGCCGUc- -3'
miRNA:   3'- uGGCUGuuuGCUGCCUG----UGCGGUAac -5'
10592 5' -52 NC_002687.1 + 137348 0.66 0.999195
Target:  5'- gUCGGCGucgaaGACGGGCugGCCc--- -3'
miRNA:   3'- uGGCUGUuug--CUGCCUGugCGGuaac -5'
10592 5' -52 NC_002687.1 + 128978 0.67 0.997251
Target:  5'- gAUCGACGAuguagcuaGCGgaucggagGCGGGCGCGCguUUGa -3'
miRNA:   3'- -UGGCUGUU--------UGC--------UGCCUGUGCGguAAC- -5'
10592 5' -52 NC_002687.1 + 123016 0.68 0.994208
Target:  5'- gGCCG-CGAuuuccACGAgCGGaaGCAUGCCGUUGu -3'
miRNA:   3'- -UGGCuGUU-----UGCU-GCC--UGUGCGGUAAC- -5'
10592 5' -52 NC_002687.1 + 120482 0.66 0.998598
Target:  5'- uCUGGCAGAaccaGugGGACAUGCaCAa-- -3'
miRNA:   3'- uGGCUGUUUg---CugCCUGUGCG-GUaac -5'
10592 5' -52 NC_002687.1 + 118181 0.66 0.999195
Target:  5'- gUCGAacgaGGACGACGGugcCGCGCCu--- -3'
miRNA:   3'- uGGCUg---UUUGCUGCCu--GUGCGGuaac -5'
10592 5' -52 NC_002687.1 + 117576 0.68 0.996251
Target:  5'- cACCGGCGAugGCGACGccuacaccCGCGCCGggugUGa -3'
miRNA:   3'- -UGGCUGUU--UGCUGCcu------GUGCGGUa---AC- -5'
10592 5' -52 NC_002687.1 + 116083 0.71 0.970656
Target:  5'- cGCCGugAuGAUGACaaguGGACACGCC-UUGu -3'
miRNA:   3'- -UGGCugU-UUGCUG----CCUGUGCGGuAAC- -5'
10592 5' -52 NC_002687.1 + 114628 0.68 0.995649
Target:  5'- aGCCGACGuccccgugauCGACGGGCGCG--AUUGa -3'
miRNA:   3'- -UGGCUGUuu--------GCUGCCUGUGCggUAAC- -5'
10592 5' -52 NC_002687.1 + 111592 0.72 0.950237
Target:  5'- cGCCGACGAACGACGuua--GCCAUUu -3'
miRNA:   3'- -UGGCUGUUUGCUGCcugugCGGUAAc -5'
10592 5' -52 NC_002687.1 + 109380 0.68 0.994971
Target:  5'- cGCCGACAAGaucaGACGcaaGACGCGgCAgUUGg -3'
miRNA:   3'- -UGGCUGUUUg---CUGC---CUGUGCgGU-AAC- -5'
10592 5' -52 NC_002687.1 + 104727 0.67 0.997661
Target:  5'- -aCGACGAguACGugGGuggcCACGCCGc-- -3'
miRNA:   3'- ugGCUGUU--UGCugCCu---GUGCGGUaac -5'
10592 5' -52 NC_002687.1 + 100889 0.71 0.973359
Target:  5'- gAUCGACAGACGugGcGccACugGCCAa-- -3'
miRNA:   3'- -UGGCUGUUUGCugC-C--UGugCGGUaac -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.