miRNA display CGI


Results 41 - 60 of 88 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10592 5' -52 NC_002687.1 + 49782 0.66 0.999195
Target:  5'- cACCGucCGAAUGACGcagacauuuGACACGUCAUc- -3'
miRNA:   3'- -UGGCu-GUUUGCUGC---------CUGUGCGGUAac -5'
10592 5' -52 NC_002687.1 + 208829 0.68 0.994208
Target:  5'- gACCGu--GACGACGGugGUGCCGa-- -3'
miRNA:   3'- -UGGCuguUUGCUGCCugUGCGGUaac -5'
10592 5' -52 NC_002687.1 + 154976 0.67 0.996978
Target:  5'- cCCGACAacagcucuguuccaaAugguACGACGGugACGCUGUUu -3'
miRNA:   3'- uGGCUGU---------------U----UGCUGCCugUGCGGUAAc -5'
10592 5' -52 NC_002687.1 + 260909 0.67 0.998019
Target:  5'- uGCCGACAAACaGAgGGACAagaGaCCcgaGUUGu -3'
miRNA:   3'- -UGGCUGUUUG-CUgCCUGUg--C-GG---UAAC- -5'
10592 5' -52 NC_002687.1 + 120482 0.66 0.998598
Target:  5'- uCUGGCAGAaccaGugGGACAUGCaCAa-- -3'
miRNA:   3'- uGGCUGUUUg---CugCCUGUGCG-GUaac -5'
10592 5' -52 NC_002687.1 + 322852 0.66 0.999338
Target:  5'- gAUCGACgGAGCGACGGcUGCGCgAUc- -3'
miRNA:   3'- -UGGCUG-UUUGCUGCCuGUGCGgUAac -5'
10592 5' -52 NC_002687.1 + 157789 0.66 0.999195
Target:  5'- uCUGGuCGAGCGACGcGAagaACGCCAa-- -3'
miRNA:   3'- uGGCU-GUUUGCUGC-CUg--UGCGGUaac -5'
10592 5' -52 NC_002687.1 + 58244 0.66 0.999195
Target:  5'- cACCGACGAuggcgucaGCGACGGGuucgaucaACGUCAa-- -3'
miRNA:   3'- -UGGCUGUU--------UGCUGCCUg-------UGCGGUaac -5'
10592 5' -52 NC_002687.1 + 145677 0.66 0.999026
Target:  5'- uCCGGCcccUGGCGGACugcuGCGCCGUc- -3'
miRNA:   3'- uGGCUGuuuGCUGCCUG----UGCGGUAac -5'
10592 5' -52 NC_002687.1 + 33559 0.66 0.999026
Target:  5'- uGCCaACGAGuaccuuuuCGugGGGCACGCUGUa- -3'
miRNA:   3'- -UGGcUGUUU--------GCugCCUGUGCGGUAac -5'
10592 5' -52 NC_002687.1 + 227295 0.7 0.978218
Target:  5'- aGCCGACGGAgcCGACgGGGCgACGCCc--- -3'
miRNA:   3'- -UGGCUGUUU--GCUG-CCUG-UGCGGuaac -5'
10592 5' -52 NC_002687.1 + 100889 0.71 0.973359
Target:  5'- gAUCGACAGACGugGcGccACugGCCAa-- -3'
miRNA:   3'- -UGGCUGUUUGCugC-C--UGugCGGUaac -5'
10592 5' -52 NC_002687.1 + 238670 0.72 0.957875
Target:  5'- cGCCGACAAGCGuCGGGCcgagaucggaGCCAg-- -3'
miRNA:   3'- -UGGCUGUUUGCuGCCUGug--------CGGUaac -5'
10592 5' -52 NC_002687.1 + 5026 0.7 0.980385
Target:  5'- cACCGACAGucacgcagauCGACaaGGACACGUCuUUGa -3'
miRNA:   3'- -UGGCUGUUu---------GCUG--CCUGUGCGGuAAC- -5'
10592 5' -52 NC_002687.1 + 30414 0.7 0.982388
Target:  5'- aGCCGGCcuACGAggaggUGGACuACGCCAa-- -3'
miRNA:   3'- -UGGCUGuuUGCU-----GCCUG-UGCGGUaac -5'
10592 5' -52 NC_002687.1 + 2393 0.66 0.998829
Target:  5'- -gCGACGAACGuaGCGGACgACGCg---- -3'
miRNA:   3'- ugGCUGUUUGC--UGCCUG-UGCGguaac -5'
10592 5' -52 NC_002687.1 + 262378 0.72 0.950237
Target:  5'- uACgCGACGAACGGCGGACGCuacCCucucUUGa -3'
miRNA:   3'- -UG-GCUGUUUGCUGCCUGUGc--GGu---AAC- -5'
10592 5' -52 NC_002687.1 + 90066 0.67 0.997251
Target:  5'- cACCGACcu-CGGCGGAgACaCCGUg- -3'
miRNA:   3'- -UGGCUGuuuGCUGCCUgUGcGGUAac -5'
10592 5' -52 NC_002687.1 + 128978 0.67 0.997251
Target:  5'- gAUCGACGAuguagcuaGCGgaucggagGCGGGCGCGCguUUGa -3'
miRNA:   3'- -UGGCUGUU--------UGC--------UGCCUGUGCGguAAC- -5'
10592 5' -52 NC_002687.1 + 181680 0.67 0.996783
Target:  5'- uGCCGAU--GCGAugUGGACGCGCuCAc-- -3'
miRNA:   3'- -UGGCUGuuUGCU--GCCUGUGCG-GUaac -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.