miRNA display CGI


Results 61 - 80 of 88 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10592 5' -52 NC_002687.1 + 9892 0.66 0.999026
Target:  5'- cACUGACGccgGACuuGACGGAUGCGUggcgCAUUGg -3'
miRNA:   3'- -UGGCUGU---UUG--CUGCCUGUGCG----GUAAC- -5'
10592 5' -52 NC_002687.1 + 254358 0.68 0.996251
Target:  5'- uUCGGCGGAgGGCGGACugcGCGUCGg-- -3'
miRNA:   3'- uGGCUGUUUgCUGCCUG---UGCGGUaac -5'
10592 5' -52 NC_002687.1 + 18486 0.68 0.995649
Target:  5'- -gUGugAAACGGCGGACGaGCUAUa- -3'
miRNA:   3'- ugGCugUUUGCUGCCUGUgCGGUAac -5'
10592 5' -52 NC_002687.1 + 61441 0.68 0.995649
Target:  5'- gAUCGGCAGcACGGacguggagacCGGACGCGUCGUg- -3'
miRNA:   3'- -UGGCUGUU-UGCU----------GCCUGUGCGGUAac -5'
10592 5' -52 NC_002687.1 + 74175 0.76 0.817514
Target:  5'- --gGGCAAAcucgcCGGCGGACugGCCGUUGu -3'
miRNA:   3'- uggCUGUUU-----GCUGCCUGugCGGUAAC- -5'
10592 5' -52 NC_002687.1 + 159177 0.75 0.871949
Target:  5'- gACCGGCGgcGACGGCGGuC-CGUCGUUGu -3'
miRNA:   3'- -UGGCUGU--UUGCUGCCuGuGCGGUAAC- -5'
10592 5' -52 NC_002687.1 + 71701 0.74 0.885762
Target:  5'- gGCCGugGAACcACGGACACuagGCCGggGg -3'
miRNA:   3'- -UGGCugUUUGcUGCCUGUG---CGGUaaC- -5'
10592 5' -52 NC_002687.1 + 307717 0.74 0.892353
Target:  5'- cGCCGAC-AGCGAUGGugACGgCAUc- -3'
miRNA:   3'- -UGGCUGuUUGCUGCCugUGCgGUAac -5'
10592 5' -52 NC_002687.1 + 22544 0.72 0.954164
Target:  5'- aGCCGuACAuaaugcGCGACGGACACuGCCu--- -3'
miRNA:   3'- -UGGC-UGUu-----UGCUGCCUGUG-CGGuaac -5'
10592 5' -52 NC_002687.1 + 262378 0.72 0.950237
Target:  5'- uACgCGACGAACGGCGGACGCuacCCucucUUGa -3'
miRNA:   3'- -UG-GCUGUUUGCUGCCUGUGc--GGu---AAC- -5'
10592 5' -52 NC_002687.1 + 238670 0.72 0.957875
Target:  5'- cGCCGACAAGCGuCGGGCcgagaucggaGCCAg-- -3'
miRNA:   3'- -UGGCUGUUUGCuGCCUGug--------CGGUaac -5'
10592 5' -52 NC_002687.1 + 100889 0.71 0.973359
Target:  5'- gAUCGACAGACGugGcGccACugGCCAa-- -3'
miRNA:   3'- -UGGCUGUUUGCugC-C--UGugCGGUaac -5'
10592 5' -52 NC_002687.1 + 227295 0.7 0.978218
Target:  5'- aGCCGACGGAgcCGACgGGGCgACGCCc--- -3'
miRNA:   3'- -UGGCUGUUU--GCUG-CCUG-UGCGGuaac -5'
10592 5' -52 NC_002687.1 + 5026 0.7 0.980385
Target:  5'- cACCGACAGucacgcagauCGACaaGGACACGUCuUUGa -3'
miRNA:   3'- -UGGCUGUUu---------GCUG--CCUGUGCGGuAAC- -5'
10592 5' -52 NC_002687.1 + 30414 0.7 0.982388
Target:  5'- aGCCGGCcuACGAggaggUGGACuACGCCAa-- -3'
miRNA:   3'- -UGGCUGuuUGCU-----GCCUG-UGCGGUaac -5'
10592 5' -52 NC_002687.1 + 307816 0.69 0.990182
Target:  5'- cACUGAUggGGACGGCGGugACGgCggUGa -3'
miRNA:   3'- -UGGCUG--UUUGCUGCCugUGCgGuaAC- -5'
10592 5' -52 NC_002687.1 + 79612 0.69 0.990182
Target:  5'- gGCCGACG--UGACGcGCACGUCGUa- -3'
miRNA:   3'- -UGGCUGUuuGCUGCcUGUGCGGUAac -5'
10592 5' -52 NC_002687.1 + 306499 0.68 0.993356
Target:  5'- cACCGACAacAACGAgaaggcauuUGGACAC-CUGUUGg -3'
miRNA:   3'- -UGGCUGU--UUGCU---------GCCUGUGcGGUAAC- -5'
10592 5' -52 NC_002687.1 + 123016 0.68 0.994208
Target:  5'- gGCCG-CGAuuuccACGAgCGGaaGCAUGCCGUUGu -3'
miRNA:   3'- -UGGCuGUU-----UGCU-GCC--UGUGCGGUAAC- -5'
10592 5' -52 NC_002687.1 + 109380 0.68 0.994971
Target:  5'- cGCCGACAAGaucaGACGcaaGACGCGgCAgUUGg -3'
miRNA:   3'- -UGGCUGUUUg---CUGC---CUGUGCgGU-AAC- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.