Results 81 - 88 of 88 are showing below:
Show page:
<< Previous Page | Next Page >>
| ID | Location | Perfect MFE.* | RefSeq Acc. |
strand
|
Start Position | R_P_ratio# | P value |
| Predicted miRNA align pattern | |||||||
| 10592 | 5' | -52 | NC_002687.1 | + | 227295 | 0.7 | 0.978218 |
|
Target: 5'- aGCCGACGGAgcCGACgGGGCgACGCCc--- -3' miRNA: 3'- -UGGCUGUUU--GCUG-CCUG-UGCGGuaac -5' |
|||||||
| 10592 | 5' | -52 | NC_002687.1 | + | 5026 | 0.7 | 0.980385 |
|
Target: 5'- cACCGACAGucacgcagauCGACaaGGACACGUCuUUGa -3' miRNA: 3'- -UGGCUGUUu---------GCUG--CCUGUGCGGuAAC- -5' |
|||||||
| 10592 | 5' | -52 | NC_002687.1 | + | 30414 | 0.7 | 0.982388 |
|
Target: 5'- aGCCGGCcuACGAggaggUGGACuACGCCAa-- -3' miRNA: 3'- -UGGCUGuuUGCU-----GCCUG-UGCGGUaac -5' |
|||||||
| 10592 | 5' | -52 | NC_002687.1 | + | 307816 | 0.69 | 0.990182 |
|
Target: 5'- cACUGAUggGGACGGCGGugACGgCggUGa -3' miRNA: 3'- -UGGCUG--UUUGCUGCCugUGCgGuaAC- -5' |
|||||||
| 10592 | 5' | -52 | NC_002687.1 | + | 79612 | 0.69 | 0.990182 |
|
Target: 5'- gGCCGACG--UGACGcGCACGUCGUa- -3' miRNA: 3'- -UGGCUGUuuGCUGCcUGUGCGGUAac -5' |
|||||||
| 10592 | 5' | -52 | NC_002687.1 | + | 306499 | 0.68 | 0.993356 |
|
Target: 5'- cACCGACAacAACGAgaaggcauuUGGACAC-CUGUUGg -3' miRNA: 3'- -UGGCUGU--UUGCU---------GCCUGUGcGGUAAC- -5' |
|||||||
| 10592 | 5' | -52 | NC_002687.1 | + | 123016 | 0.68 | 0.994208 |
|
Target: 5'- gGCCG-CGAuuuccACGAgCGGaaGCAUGCCGUUGu -3' miRNA: 3'- -UGGCuGUU-----UGCU-GCC--UGUGCGGUAAC- -5' |
|||||||
| 10592 | 5' | -52 | NC_002687.1 | + | 205445 | 0.76 | 0.817514 |
|
Target: 5'- aACUGGCGGuguCGugGGACACGCUGUg- -3' miRNA: 3'- -UGGCUGUUu--GCugCCUGUGCGGUAac -5' |
|||||||
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home