miRNA display CGI


Results 21 - 40 of 88 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10592 5' -52 NC_002687.1 + 84903 0.66 0.998829
Target:  5'- cACCGACGgcacGACGAugcCGGugACGUCu--- -3'
miRNA:   3'- -UGGCUGU----UUGCU---GCCugUGCGGuaac -5'
10592 5' -52 NC_002687.1 + 2393 0.66 0.998829
Target:  5'- -gCGACGAACGuaGCGGACgACGCg---- -3'
miRNA:   3'- ugGCUGUUUGC--UGCCUG-UGCGguaac -5'
10592 5' -52 NC_002687.1 + 271758 0.66 0.999026
Target:  5'- gGCCGAguCAGGugcauCGACGGGCGaGCuCAUUGa -3'
miRNA:   3'- -UGGCU--GUUU-----GCUGCCUGUgCG-GUAAC- -5'
10592 5' -52 NC_002687.1 + 9892 0.66 0.999026
Target:  5'- cACUGACGccgGACuuGACGGAUGCGUggcgCAUUGg -3'
miRNA:   3'- -UGGCUGU---UUG--CUGCCUGUGCG----GUAAC- -5'
10592 5' -52 NC_002687.1 + 137348 0.66 0.999195
Target:  5'- gUCGGCGucgaaGACGGGCugGCCc--- -3'
miRNA:   3'- uGGCUGUuug--CUGCCUGugCGGuaac -5'
10592 5' -52 NC_002687.1 + 118181 0.66 0.999195
Target:  5'- gUCGAacgaGGACGACGGugcCGCGCCu--- -3'
miRNA:   3'- uGGCUg---UUUGCUGCCu--GUGCGGuaac -5'
10592 5' -52 NC_002687.1 + 212119 0.66 0.999195
Target:  5'- gGCCGACGAcgGCGACGaAUACaaaGCCGa-- -3'
miRNA:   3'- -UGGCUGUU--UGCUGCcUGUG---CGGUaac -5'
10592 5' -52 NC_002687.1 + 22123 0.66 0.999338
Target:  5'- cACCaGgAggUGGCGGACGCGCUc--- -3'
miRNA:   3'- -UGGcUgUuuGCUGCCUGUGCGGuaac -5'
10592 5' -52 NC_002687.1 + 259846 0.66 0.998829
Target:  5'- -aCGGC-GGCGAUGGACcCGUUGUUGg -3'
miRNA:   3'- ugGCUGuUUGCUGCCUGuGCGGUAAC- -5'
10592 5' -52 NC_002687.1 + 165256 0.66 0.998829
Target:  5'- uCCGACGGACGAUacguuccaguGGACuuCGCCu--- -3'
miRNA:   3'- uGGCUGUUUGCUG----------CCUGu-GCGGuaac -5'
10592 5' -52 NC_002687.1 + 18486 0.68 0.995649
Target:  5'- -gUGugAAACGGCGGACGaGCUAUa- -3'
miRNA:   3'- ugGCugUUUGCUGCCUGUgCGGUAac -5'
10592 5' -52 NC_002687.1 + 254358 0.68 0.996251
Target:  5'- uUCGGCGGAgGGCGGACugcGCGUCGg-- -3'
miRNA:   3'- uGGCUGUUUgCUGCCUG---UGCGGUaac -5'
10592 5' -52 NC_002687.1 + 154992 0.68 0.996251
Target:  5'- gGCCGACAcAACGgccuggugaGCGGAUuuuugaacaaagACGCCGUUc -3'
miRNA:   3'- -UGGCUGU-UUGC---------UGCCUG------------UGCGGUAAc -5'
10592 5' -52 NC_002687.1 + 181680 0.67 0.996783
Target:  5'- uGCCGAU--GCGAugUGGACGCGCuCAc-- -3'
miRNA:   3'- -UGGCUGuuUGCU--GCCUGUGCG-GUaac -5'
10592 5' -52 NC_002687.1 + 128978 0.67 0.997251
Target:  5'- gAUCGACGAuguagcuaGCGgaucggagGCGGGCGCGCguUUGa -3'
miRNA:   3'- -UGGCUGUU--------UGC--------UGCCUGUGCGguAAC- -5'
10592 5' -52 NC_002687.1 + 90066 0.67 0.997251
Target:  5'- cACCGACcu-CGGCGGAgACaCCGUg- -3'
miRNA:   3'- -UGGCUGuuuGCUGCCUgUGcGGUAac -5'
10592 5' -52 NC_002687.1 + 174825 0.67 0.998019
Target:  5'- gGCUGACGAcucCGACGGACAauacgUGCCc--- -3'
miRNA:   3'- -UGGCUGUUu--GCUGCCUGU-----GCGGuaac -5'
10592 5' -52 NC_002687.1 + 11340 0.67 0.998329
Target:  5'- --gGACAGACG-CGGuACGCGCUAg-- -3'
miRNA:   3'- uggCUGUUUGCuGCC-UGUGCGGUaac -5'
10592 5' -52 NC_002687.1 + 322852 0.66 0.999338
Target:  5'- gAUCGACgGAGCGACGGcUGCGCgAUc- -3'
miRNA:   3'- -UGGCUG-UUUGCUGCCuGUGCGgUAac -5'
10592 5' -52 NC_002687.1 + 323658 0.99 0.062611
Target:  5'- cACCGACAAACGACGGGCACGCCAc-- -3'
miRNA:   3'- -UGGCUGUUUGCUGCCUGUGCGGUaac -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.