miRNA display CGI


Results 21 - 40 of 88 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10592 5' -52 NC_002687.1 + 165256 0.66 0.998829
Target:  5'- uCCGACGGACGAUacguuccaguGGACuuCGCCu--- -3'
miRNA:   3'- uGGCUGUUUGCUG----------CCUGu-GCGGuaac -5'
10592 5' -52 NC_002687.1 + 120482 0.66 0.998598
Target:  5'- uCUGGCAGAaccaGugGGACAUGCaCAa-- -3'
miRNA:   3'- uGGCUGUUUg---CugCCUGUGCG-GUaac -5'
10592 5' -52 NC_002687.1 + 329050 0.66 0.998598
Target:  5'- gGCCGGa----GACGGACGCGCgGc-- -3'
miRNA:   3'- -UGGCUguuugCUGCCUGUGCGgUaac -5'
10592 5' -52 NC_002687.1 + 11340 0.67 0.998329
Target:  5'- --gGACAGACG-CGGuACGCGCUAg-- -3'
miRNA:   3'- uggCUGUUUGCuGCC-UGUGCGGUaac -5'
10592 5' -52 NC_002687.1 + 18333 0.67 0.998329
Target:  5'- gGCgGGCGguGAUGACaGugACGCCGUg- -3'
miRNA:   3'- -UGgCUGU--UUGCUGcCugUGCGGUAac -5'
10592 5' -52 NC_002687.1 + 226667 0.67 0.998019
Target:  5'- cAUCGGCGAggaaggauGCGugGaGGCAUGCCGg-- -3'
miRNA:   3'- -UGGCUGUU--------UGCugC-CUGUGCGGUaac -5'
10592 5' -52 NC_002687.1 + 260909 0.67 0.998019
Target:  5'- uGCCGACAAACaGAgGGACAagaGaCCcgaGUUGu -3'
miRNA:   3'- -UGGCUGUUUG-CUgCCUGUg--C-GG---UAAC- -5'
10592 5' -52 NC_002687.1 + 86745 0.67 0.998019
Target:  5'- cGCUGACGgcGAUGACGGAC-C-CCAUg- -3'
miRNA:   3'- -UGGCUGU--UUGCUGCCUGuGcGGUAac -5'
10592 5' -52 NC_002687.1 + 174825 0.67 0.998019
Target:  5'- gGCUGACGAcucCGACGGACAauacgUGCCc--- -3'
miRNA:   3'- -UGGCUGUUu--GCUGCCUGU-----GCGGuaac -5'
10592 5' -52 NC_002687.1 + 208590 0.67 0.997661
Target:  5'- -gCGAC-GACGACGGugGUGCCGa-- -3'
miRNA:   3'- ugGCUGuUUGCUGCCugUGCGGUaac -5'
10592 5' -52 NC_002687.1 + 104727 0.67 0.997661
Target:  5'- -aCGACGAguACGugGGuggcCACGCCGc-- -3'
miRNA:   3'- ugGCUGUU--UGCugCCu---GUGCGGUaac -5'
10592 5' -52 NC_002687.1 + 128978 0.67 0.997251
Target:  5'- gAUCGACGAuguagcuaGCGgaucggagGCGGGCGCGCguUUGa -3'
miRNA:   3'- -UGGCUGUU--------UGC--------UGCCUGUGCGguAAC- -5'
10592 5' -52 NC_002687.1 + 90066 0.67 0.997251
Target:  5'- cACCGACcu-CGGCGGAgACaCCGUg- -3'
miRNA:   3'- -UGGCUGuuuGCUGCCUgUGcGGUAac -5'
10592 5' -52 NC_002687.1 + 154976 0.67 0.996978
Target:  5'- cCCGACAacagcucuguuccaaAugguACGACGGugACGCUGUUu -3'
miRNA:   3'- uGGCUGU---------------U----UGCUGCCugUGCGGUAAc -5'
10592 5' -52 NC_002687.1 + 181680 0.67 0.996783
Target:  5'- uGCCGAU--GCGAugUGGACGCGCuCAc-- -3'
miRNA:   3'- -UGGCUGuuUGCU--GCCUGUGCG-GUaac -5'
10592 5' -52 NC_002687.1 + 154992 0.68 0.996251
Target:  5'- gGCCGACAcAACGgccuggugaGCGGAUuuuugaacaaagACGCCGUUc -3'
miRNA:   3'- -UGGCUGU-UUGC---------UGCCUG------------UGCGGUAAc -5'
10592 5' -52 NC_002687.1 + 117576 0.68 0.996251
Target:  5'- cACCGGCGAugGCGACGccuacaccCGCGCCGggugUGa -3'
miRNA:   3'- -UGGCUGUU--UGCUGCcu------GUGCGGUa---AC- -5'
10592 5' -52 NC_002687.1 + 254358 0.68 0.996251
Target:  5'- uUCGGCGGAgGGCGGACugcGCGUCGg-- -3'
miRNA:   3'- uGGCUGUUUgCUGCCUG---UGCGGUaac -5'
10592 5' -52 NC_002687.1 + 18486 0.68 0.995649
Target:  5'- -gUGugAAACGGCGGACGaGCUAUa- -3'
miRNA:   3'- ugGCugUUUGCUGCCUGUgCGGUAac -5'
10592 5' -52 NC_002687.1 + 61441 0.68 0.995649
Target:  5'- gAUCGGCAGcACGGacguggagacCGGACGCGUCGUg- -3'
miRNA:   3'- -UGGCUGUU-UGCU----------GCCUGUGCGGUAac -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.