Results 41 - 46 of 46 are showing below:
Show page:
<< Previous Page | Next Page >>
| ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value
|
| Predicted miRNA align pattern | |||||||
| 10593 | 3' | -59.6 | NC_002687.1 | + | 10471 | 0.66 | 0.90437 |
|
Target: 5'- gGugGCACauCGGGUgccgugucGGAuGCGGGGACGGa -3' miRNA: 3'- -UugCGUG--GCCCG--------CCU-CGUCUCUGUCg -5' |
|||||||
| 10593 | 3' | -59.6 | NC_002687.1 | + | 270406 | 0.66 | 0.906694 |
|
Target: 5'- --gGCuuCGGGCGGGGCugcggagggggacaaGGAGACuGUc -3' miRNA: 3'- uugCGugGCCCGCCUCG---------------UCUCUGuCG- -5' |
|||||||
| 10593 | 3' | -59.6 | NC_002687.1 | + | 284368 | 0.66 | 0.909552 |
|
Target: 5'- uGACaGCACCaGaGGCGGcgcguucAGCAGGugcaucGACAGCu -3' miRNA: 3'- -UUG-CGUGG-C-CCGCC-------UCGUCU------CUGUCG- -5' |
|||||||
| 10593 | 3' | -59.6 | NC_002687.1 | + | 309178 | 0.66 | 0.910117 |
|
Target: 5'- cGAUGCugC-GGCGGAGacu-GGCGGCg -3' miRNA: 3'- -UUGCGugGcCCGCCUCgucuCUGUCG- -5' |
|||||||
| 10593 | 3' | -59.6 | NC_002687.1 | + | 11401 | 0.66 | 0.910117 |
|
Target: 5'- uAGCaGCAgCGGuaGCGGuggcAGCAGcGGCAGCa -3' miRNA: 3'- -UUG-CGUgGCC--CGCC----UCGUCuCUGUCG- -5' |
|||||||
| 10593 | 3' | -59.6 | NC_002687.1 | + | 201269 | 0.66 | 0.910681 |
|
Target: 5'- gGACgGUACCucgaaaaacaauuauGGCGGcguaaAGCAGAGACGGUa -3' miRNA: 3'- -UUG-CGUGGc--------------CCGCC-----UCGUCUCUGUCG- -5' |
|||||||
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home