Results 41 - 46 of 46 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position![]() |
R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
10593 | 3' | -59.6 | NC_002687.1 | + | 305210 | 0.68 | 0.82834 |
Target: 5'- --gGCACCGGaCGG-GCAGAGGCu-- -3' miRNA: 3'- uugCGUGGCCcGCCuCGUCUCUGucg -5' |
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10593 | 3' | -59.6 | NC_002687.1 | + | 309178 | 0.66 | 0.910117 |
Target: 5'- cGAUGCugC-GGCGGAGacu-GGCGGCg -3' miRNA: 3'- -UUGCGugGcCCGCCUCgucuCUGUCG- -5' |
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10593 | 3' | -59.6 | NC_002687.1 | + | 309888 | 0.68 | 0.804013 |
Target: 5'- -uCGCuaUGGGUGGGGCGGugGGGCAGUg -3' miRNA: 3'- uuGCGugGCCCGCCUCGUC--UCUGUCG- -5' |
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10593 | 3' | -59.6 | NC_002687.1 | + | 313431 | 0.67 | 0.87261 |
Target: 5'- -uCGUAaaagaCGGGCaGAaauucugaaGCAGAGGCGGCg -3' miRNA: 3'- uuGCGUg----GCCCGcCU---------CGUCUCUGUCG- -5' |
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10593 | 3' | -59.6 | NC_002687.1 | + | 316021 | 0.69 | 0.769701 |
Target: 5'- gAugGUGCCGGuGgGGAcgGUGGGGACGGUg -3' miRNA: 3'- -UugCGUGGCC-CgCCU--CGUCUCUGUCG- -5' |
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10593 | 3' | -59.6 | NC_002687.1 | + | 331014 | 1.09 | 0.003046 |
Target: 5'- gAACGCACCGGGCGGAGCAGAGACAGCu -3' miRNA: 3'- -UUGCGUGGCCCGCCUCGUCUCUGUCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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