miRNA display CGI


Results 21 - 40 of 46 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10593 3' -59.6 NC_002687.1 + 224161 0.73 0.516411
Target:  5'- uGGCGCugGCgGuGGCGGuGGCGGGGGCAGUg -3'
miRNA:   3'- -UUGCG--UGgC-CCGCC-UCGUCUCUGUCG- -5'
10593 3' -59.6 NC_002687.1 + 216830 0.67 0.865676
Target:  5'- cACGCACCGGGUuccGuCGuGGACAGCa -3'
miRNA:   3'- uUGCGUGGCCCGccuC-GUcUCUGUCG- -5'
10593 3' -59.6 NC_002687.1 + 214982 0.68 0.787102
Target:  5'- -uCGaCACCGG-CGGGGCcGAGgGCGGCg -3'
miRNA:   3'- uuGC-GUGGCCcGCCUCGuCUC-UGUCG- -5'
10593 3' -59.6 NC_002687.1 + 209849 0.68 0.820379
Target:  5'- gAACGCGCCuGGCGcGAGUGGAGGu--- -3'
miRNA:   3'- -UUGCGUGGcCCGC-CUCGUCUCUgucg -5'
10593 3' -59.6 NC_002687.1 + 201877 0.8 0.225986
Target:  5'- cGCGCGCuCGGGCGGGGCAGGcGGguGUg -3'
miRNA:   3'- uUGCGUG-GCCCGCCUCGUCU-CUguCG- -5'
10593 3' -59.6 NC_002687.1 + 201269 0.66 0.910681
Target:  5'- gGACgGUACCucgaaaaacaauuauGGCGGcguaaAGCAGAGACGGUa -3'
miRNA:   3'- -UUG-CGUGGc--------------CCGCC-----UCGUCUCUGUCG- -5'
10593 3' -59.6 NC_002687.1 + 200963 0.78 0.289089
Target:  5'- uGCGCGCuCGGGCGGGGCAGgcGGGCGuGUu -3'
miRNA:   3'- uUGCGUG-GCCCGCCUCGUC--UCUGU-CG- -5'
10593 3' -59.6 NC_002687.1 + 200557 0.69 0.742812
Target:  5'- cGACGC-UCGGGCGGA----AGACGGCa -3'
miRNA:   3'- -UUGCGuGGCCCGCCUcgucUCUGUCG- -5'
10593 3' -59.6 NC_002687.1 + 173599 0.68 0.820379
Target:  5'- nGAgGCGg-GGGCGGAgGCGGAGGCGGa -3'
miRNA:   3'- -UUgCGUggCCCGCCU-CGUCUCUGUCg -5'
10593 3' -59.6 NC_002687.1 + 173571 0.7 0.686945
Target:  5'- aGGCGCAggUgGaGGCGGAgGCGGAGGCGGa -3'
miRNA:   3'- -UUGCGU--GgC-CCGCCU-CGUCUCUGUCg -5'
10593 3' -59.6 NC_002687.1 + 173487 0.68 0.804013
Target:  5'- aGGCGCaaguggagGCgGaGGCGGAGguGGGACuggaGGCg -3'
miRNA:   3'- -UUGCG--------UGgC-CCGCCUCguCUCUG----UCG- -5'
10593 3' -59.6 NC_002687.1 + 172294 0.68 0.804013
Target:  5'- gAACGguggGGGCGGGGguGGGACAGg -3'
miRNA:   3'- -UUGCguggCCCGCCUCguCUCUGUCg -5'
10593 3' -59.6 NC_002687.1 + 167568 0.69 0.75187
Target:  5'- cGACGCACCaucuccaGCGGGGUGGAGACGu- -3'
miRNA:   3'- -UUGCGUGGcc-----CGCCUCGUCUCUGUcg -5'
10593 3' -59.6 NC_002687.1 + 145483 0.67 0.87261
Target:  5'- cGCGCGCCucGGC-GAGCAGAu-CGGCa -3'
miRNA:   3'- uUGCGUGGc-CCGcCUCGUCUcuGUCG- -5'
10593 3' -59.6 NC_002687.1 + 145325 0.68 0.82834
Target:  5'- --gGCACCGaGGUGGcugacGCGGAcaaGGCGGCg -3'
miRNA:   3'- uugCGUGGC-CCGCCu----CGUCU---CUGUCG- -5'
10593 3' -59.6 NC_002687.1 + 88931 0.69 0.760835
Target:  5'- uGCGCGCUGGcGCGGGccGCgAGuucGGCGGCa -3'
miRNA:   3'- uUGCGUGGCC-CGCCU--CG-UCu--CUGUCG- -5'
10593 3' -59.6 NC_002687.1 + 65948 0.67 0.858557
Target:  5'- cACGUACaCGGGgGGAaucGAGACAGUc -3'
miRNA:   3'- uUGCGUG-GCCCgCCUcguCUCUGUCG- -5'
10593 3' -59.6 NC_002687.1 + 58146 0.72 0.5828
Target:  5'- aGAUGCAaaccacccucucucaCGuGGCGGAG-AGAGACAGCg -3'
miRNA:   3'- -UUGCGUg--------------GC-CCGCCUCgUCUCUGUCG- -5'
10593 3' -59.6 NC_002687.1 + 25413 0.66 0.885908
Target:  5'- gGAUGCAC--GGCGGuGCAGGaguaccgcuacGACGGCg -3'
miRNA:   3'- -UUGCGUGgcCCGCCuCGUCU-----------CUGUCG- -5'
10593 3' -59.6 NC_002687.1 + 18672 0.7 0.686945
Target:  5'- -cCGCcCCcgaagcagGGGCaGGAGCAGGGGCAGg -3'
miRNA:   3'- uuGCGuGG--------CCCG-CCUCGUCUCUGUCg -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.