Results 41 - 46 of 46 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
10593 | 3' | -59.6 | NC_002687.1 | + | 88931 | 0.69 | 0.760835 |
Target: 5'- uGCGCGCUGGcGCGGGccGCgAGuucGGCGGCa -3' miRNA: 3'- uUGCGUGGCC-CGCCU--CG-UCu--CUGUCG- -5' |
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10593 | 3' | -59.6 | NC_002687.1 | + | 257381 | 0.7 | 0.715158 |
Target: 5'- cGACGCGCuCGGGCcaguguguaucGGAGguGuG-CAGCa -3' miRNA: 3'- -UUGCGUG-GCCCG-----------CCUCguCuCuGUCG- -5' |
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10593 | 3' | -59.6 | NC_002687.1 | + | 18672 | 0.7 | 0.686945 |
Target: 5'- -cCGCcCCcgaagcagGGGCaGGAGCAGGGGCAGg -3' miRNA: 3'- uuGCGuGG--------CCCG-CCUCGUCUCUGUCg -5' |
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10593 | 3' | -59.6 | NC_002687.1 | + | 58146 | 0.72 | 0.5828 |
Target: 5'- aGAUGCAaaccacccucucucaCGuGGCGGAG-AGAGACAGCg -3' miRNA: 3'- -UUGCGUg--------------GC-CCGCCUCgUCUCUGUCG- -5' |
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10593 | 3' | -59.6 | NC_002687.1 | + | 276386 | 0.73 | 0.525599 |
Target: 5'- gAGCGCACC---CGGGGUAGAGGCAGUc -3' miRNA: 3'- -UUGCGUGGcccGCCUCGUCUCUGUCG- -5' |
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10593 | 3' | -59.6 | NC_002687.1 | + | 309178 | 0.66 | 0.910117 |
Target: 5'- cGAUGCugC-GGCGGAGacu-GGCGGCg -3' miRNA: 3'- -UUGCGugGcCCGCCUCgucuCUGUCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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