Results 1 - 20 of 36 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
10593 | 5' | -55.7 | NC_002687.1 | + | 331051 | 1.08 | 0.006836 |
Target: 5'- gGCACCACCUUGCACCACCUUGCGGUAc -3' miRNA: 3'- -CGUGGUGGAACGUGGUGGAACGCCAU- -5' |
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10593 | 5' | -55.7 | NC_002687.1 | + | 145693 | 0.72 | 0.788768 |
Target: 5'- aCGCCGCCUUGUccgcgucaGCCACCU--CGGUGc -3' miRNA: 3'- cGUGGUGGAACG--------UGGUGGAacGCCAU- -5' |
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10593 | 5' | -55.7 | NC_002687.1 | + | 226357 | 0.72 | 0.797519 |
Target: 5'- aGCACgACCUUcaGCACUACCUcccaccgGUGGUGc -3' miRNA: 3'- -CGUGgUGGAA--CGUGGUGGAa------CGCCAU- -5' |
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10593 | 5' | -55.7 | NC_002687.1 | + | 226171 | 0.72 | 0.797519 |
Target: 5'- aGCACgACCUUcaGCACUACCUcccaccgGUGGUGc -3' miRNA: 3'- -CGUGgUGGAA--CGUGGUGGAa------CGCCAU- -5' |
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10593 | 5' | -55.7 | NC_002687.1 | + | 232267 | 0.71 | 0.814595 |
Target: 5'- uGCACUGCCUUGUugCGCuCUUuggggGUGGUGa -3' miRNA: 3'- -CGUGGUGGAACGugGUG-GAA-----CGCCAU- -5' |
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10593 | 5' | -55.7 | NC_002687.1 | + | 210327 | 0.71 | 0.822906 |
Target: 5'- gGCACCAUC-UGCACCACCggcaccaCGGg- -3' miRNA: 3'- -CGUGGUGGaACGUGGUGGaac----GCCau -5' |
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10593 | 5' | -55.7 | NC_002687.1 | + | 210354 | 0.71 | 0.822906 |
Target: 5'- gGCACCAUC-UGCACCACCggcaccaCGGg- -3' miRNA: 3'- -CGUGGUGGaACGUGGUGGaac----GCCau -5' |
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10593 | 5' | -55.7 | NC_002687.1 | + | 133603 | 0.71 | 0.822906 |
Target: 5'- aCACCGCgUUGC-CCGCCUUGUcuuugcccgcguGGUAg -3' miRNA: 3'- cGUGGUGgAACGuGGUGGAACG------------CCAU- -5' |
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10593 | 5' | -55.7 | NC_002687.1 | + | 210219 | 0.71 | 0.831055 |
Target: 5'- gGCACCACag-GCACCACCU-GCa--- -3' miRNA: 3'- -CGUGGUGgaaCGUGGUGGAaCGccau -5' |
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10593 | 5' | -55.7 | NC_002687.1 | + | 163454 | 0.71 | 0.846841 |
Target: 5'- cGCACgGCCUggaguucaUGUAgCCGCCUUGCGaGUu -3' miRNA: 3'- -CGUGgUGGA--------ACGU-GGUGGAACGC-CAu -5' |
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10593 | 5' | -55.7 | NC_002687.1 | + | 284736 | 0.71 | 0.846841 |
Target: 5'- uGCACCugCUgaacGCGCCGCCUc-UGGUGc -3' miRNA: 3'- -CGUGGugGAa---CGUGGUGGAacGCCAU- -5' |
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10593 | 5' | -55.7 | NC_002687.1 | + | 217942 | 0.7 | 0.861901 |
Target: 5'- uCGCCGCC---CGCCACCccgUUGCGGUAc -3' miRNA: 3'- cGUGGUGGaacGUGGUGG---AACGCCAU- -5' |
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10593 | 5' | -55.7 | NC_002687.1 | + | 293827 | 0.7 | 0.869144 |
Target: 5'- aGCuCCGCUga-UACCACCUUGCGGc- -3' miRNA: 3'- -CGuGGUGGaacGUGGUGGAACGCCau -5' |
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10593 | 5' | -55.7 | NC_002687.1 | + | 226729 | 0.7 | 0.876189 |
Target: 5'- aGCACgACCUUcaGCACUACCUcccacCGGUAg -3' miRNA: 3'- -CGUGgUGGAA--CGUGGUGGAac---GCCAU- -5' |
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10593 | 5' | -55.7 | NC_002687.1 | + | 226543 | 0.7 | 0.876189 |
Target: 5'- aGCACgACCUUcaGCACUACCUcccacCGGUAg -3' miRNA: 3'- -CGUGgUGGAA--CGUGGUGGAac---GCCAU- -5' |
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10593 | 5' | -55.7 | NC_002687.1 | + | 241522 | 0.69 | 0.896089 |
Target: 5'- cCGCCACCgUUG-GCCACCgcgGCGGg- -3' miRNA: 3'- cGUGGUGG-AACgUGGUGGaa-CGCCau -5' |
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10593 | 5' | -55.7 | NC_002687.1 | + | 303323 | 0.69 | 0.912355 |
Target: 5'- uGCACUugCUUGCAUUACCcgagggguugcacgUggGCGGUGc -3' miRNA: 3'- -CGUGGugGAACGUGGUGG--------------Aa-CGCCAU- -5' |
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10593 | 5' | -55.7 | NC_002687.1 | + | 89366 | 0.69 | 0.914064 |
Target: 5'- -aACuCugUUUGCACC-UCUUGCGGUGu -3' miRNA: 3'- cgUG-GugGAACGUGGuGGAACGCCAU- -5' |
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10593 | 5' | -55.7 | NC_002687.1 | + | 107915 | 0.69 | 0.914064 |
Target: 5'- aCGCCACCgagaGCCACCUUGaUGGg- -3' miRNA: 3'- cGUGGUGGaacgUGGUGGAAC-GCCau -5' |
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10593 | 5' | -55.7 | NC_002687.1 | + | 81295 | 0.68 | 0.939599 |
Target: 5'- uGCAUCGCUUUGCGCCAUagCUUuaGGa- -3' miRNA: 3'- -CGUGGUGGAACGUGGUG--GAAcgCCau -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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