miRNA display CGI


Results 21 - 36 of 36 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10593 5' -55.7 NC_002687.1 + 241522 0.69 0.896089
Target:  5'- cCGCCACCgUUG-GCCACCgcgGCGGg- -3'
miRNA:   3'- cGUGGUGG-AACgUGGUGGaa-CGCCau -5'
10593 5' -55.7 NC_002687.1 + 226729 0.7 0.876189
Target:  5'- aGCACgACCUUcaGCACUACCUcccacCGGUAg -3'
miRNA:   3'- -CGUGgUGGAA--CGUGGUGGAac---GCCAU- -5'
10593 5' -55.7 NC_002687.1 + 226543 0.7 0.876189
Target:  5'- aGCACgACCUUcaGCACUACCUcccacCGGUAg -3'
miRNA:   3'- -CGUGgUGGAA--CGUGGUGGAac---GCCAU- -5'
10593 5' -55.7 NC_002687.1 + 293827 0.7 0.869144
Target:  5'- aGCuCCGCUga-UACCACCUUGCGGc- -3'
miRNA:   3'- -CGuGGUGGaacGUGGUGGAACGCCau -5'
10593 5' -55.7 NC_002687.1 + 217942 0.7 0.861901
Target:  5'- uCGCCGCC---CGCCACCccgUUGCGGUAc -3'
miRNA:   3'- cGUGGUGGaacGUGGUGG---AACGCCAU- -5'
10593 5' -55.7 NC_002687.1 + 163454 0.71 0.846841
Target:  5'- cGCACgGCCUggaguucaUGUAgCCGCCUUGCGaGUu -3'
miRNA:   3'- -CGUGgUGGA--------ACGU-GGUGGAACGC-CAu -5'
10593 5' -55.7 NC_002687.1 + 284736 0.71 0.846841
Target:  5'- uGCACCugCUgaacGCGCCGCCUc-UGGUGc -3'
miRNA:   3'- -CGUGGugGAa---CGUGGUGGAacGCCAU- -5'
10593 5' -55.7 NC_002687.1 + 210219 0.71 0.831055
Target:  5'- gGCACCACag-GCACCACCU-GCa--- -3'
miRNA:   3'- -CGUGGUGgaaCGUGGUGGAaCGccau -5'
10593 5' -55.7 NC_002687.1 + 210327 0.71 0.822906
Target:  5'- gGCACCAUC-UGCACCACCggcaccaCGGg- -3'
miRNA:   3'- -CGUGGUGGaACGUGGUGGaac----GCCau -5'
10593 5' -55.7 NC_002687.1 + 210354 0.71 0.822906
Target:  5'- gGCACCAUC-UGCACCACCggcaccaCGGg- -3'
miRNA:   3'- -CGUGGUGGaACGUGGUGGaac----GCCau -5'
10593 5' -55.7 NC_002687.1 + 133603 0.71 0.822906
Target:  5'- aCACCGCgUUGC-CCGCCUUGUcuuugcccgcguGGUAg -3'
miRNA:   3'- cGUGGUGgAACGuGGUGGAACG------------CCAU- -5'
10593 5' -55.7 NC_002687.1 + 232267 0.71 0.814595
Target:  5'- uGCACUGCCUUGUugCGCuCUUuggggGUGGUGa -3'
miRNA:   3'- -CGUGGUGGAACGugGUG-GAA-----CGCCAU- -5'
10593 5' -55.7 NC_002687.1 + 226357 0.72 0.797519
Target:  5'- aGCACgACCUUcaGCACUACCUcccaccgGUGGUGc -3'
miRNA:   3'- -CGUGgUGGAA--CGUGGUGGAa------CGCCAU- -5'
10593 5' -55.7 NC_002687.1 + 226171 0.72 0.797519
Target:  5'- aGCACgACCUUcaGCACUACCUcccaccgGUGGUGc -3'
miRNA:   3'- -CGUGgUGGAA--CGUGGUGGAa------CGCCAU- -5'
10593 5' -55.7 NC_002687.1 + 145693 0.72 0.788768
Target:  5'- aCGCCGCCUUGUccgcgucaGCCACCU--CGGUGc -3'
miRNA:   3'- cGUGGUGGAACG--------UGGUGGAacGCCAU- -5'
10593 5' -55.7 NC_002687.1 + 331051 1.08 0.006836
Target:  5'- gGCACCACCUUGCACCACCUUGCGGUAc -3'
miRNA:   3'- -CGUGGUGGAACGUGGUGGAACGCCAU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.