miRNA display CGI


Results 1 - 20 of 34 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10595 3' -57.8 NC_002687.1 + 280906 0.66 0.95847
Target:  5'- uUUCUGAacgaagccuCAGCGAUgccgGGGGCCcGUGUUGa -3'
miRNA:   3'- -AAGGCU---------GUCGCUG----CCUCGGuCACAGC- -5'
10595 3' -57.8 NC_002687.1 + 11334 0.66 0.951145
Target:  5'- --gCGGCGGCaGCaGGAGCagcgGGUGUCGg -3'
miRNA:   3'- aagGCUGUCGcUG-CCUCGg---UCACAGC- -5'
10595 3' -57.8 NC_002687.1 + 214980 0.66 0.951145
Target:  5'- gUUCGACAcCGGCGGGGCCgAGgg-CGg -3'
miRNA:   3'- aAGGCUGUcGCUGCCUCGG-UCacaGC- -5'
10595 3' -57.8 NC_002687.1 + 277140 0.66 0.948789
Target:  5'- gUCCGauggccgccgacgagGCAGCGcGCGGGGCUuuuGcUGUCGg -3'
miRNA:   3'- aAGGC---------------UGUCGC-UGCCUCGGu--C-ACAGC- -5'
10595 3' -57.8 NC_002687.1 + 125133 0.66 0.947176
Target:  5'- aUUUgGGCaagAGcCGGCGGAGUCcGUGUCGa -3'
miRNA:   3'- -AAGgCUG---UC-GCUGCCUCGGuCACAGC- -5'
10595 3' -57.8 NC_002687.1 + 259846 0.66 0.943001
Target:  5'- --aCGGCGGCGAUGGAcCCGuUGUUGg -3'
miRNA:   3'- aagGCUGUCGCUGCCUcGGUcACAGC- -5'
10595 3' -57.8 NC_002687.1 + 139959 0.66 0.943001
Target:  5'- gUCaacuACGGCGAUGGAGCC-GUGUa- -3'
miRNA:   3'- aAGgc--UGUCGCUGCCUCGGuCACAgc -5'
10595 3' -57.8 NC_002687.1 + 297708 0.66 0.941708
Target:  5'- -aCCGcCGGgGAUGGGGCCGGagcgcccaggagguUGUCa -3'
miRNA:   3'- aaGGCuGUCgCUGCCUCGGUC--------------ACAGc -5'
10595 3' -57.8 NC_002687.1 + 225700 0.66 0.938617
Target:  5'- cUCaGGCAGC--UGGAGCCGGUG-CGg -3'
miRNA:   3'- aAGgCUGUCGcuGCCUCGGUCACaGC- -5'
10595 3' -57.8 NC_002687.1 + 122431 0.66 0.938617
Target:  5'- -aCCaGAUuucgGACGGAGUCAGUGUCa -3'
miRNA:   3'- aaGG-CUGucg-CUGCCUCGGUCACAGc -5'
10595 3' -57.8 NC_002687.1 + 87472 0.66 0.938617
Target:  5'- -aUCGGgGGCGugGGA-CCGGUGUgGu -3'
miRNA:   3'- aaGGCUgUCGCugCCUcGGUCACAgC- -5'
10595 3' -57.8 NC_002687.1 + 32291 0.66 0.938617
Target:  5'- aUUCGAgGuGCGcaACGGAGCCgAGUGUaCGg -3'
miRNA:   3'- aAGGCUgU-CGC--UGCCUCGG-UCACA-GC- -5'
10595 3' -57.8 NC_002687.1 + 37450 0.66 0.938617
Target:  5'- cUUCaGCaggGGCGGCGGAGCCgAGUGUa- -3'
miRNA:   3'- aAGGcUG---UCGCUGCCUCGG-UCACAgc -5'
10595 3' -57.8 NC_002687.1 + 224172 0.67 0.929216
Target:  5'- --gUGGCGGUGGCGGGGgCAGUGcUGg -3'
miRNA:   3'- aagGCUGUCGCUGCCUCgGUCACaGC- -5'
10595 3' -57.8 NC_002687.1 + 279426 0.67 0.929216
Target:  5'- -gCCGAUGGCGGCGaGuuugaGGCCgcuGGUGUCa -3'
miRNA:   3'- aaGGCUGUCGCUGC-C-----UCGG---UCACAGc -5'
10595 3' -57.8 NC_002687.1 + 146379 0.67 0.928724
Target:  5'- gUCCGACggagaAGCGGCGGcgcagguucuugaAGUCGGUGgggCGu -3'
miRNA:   3'- aAGGCUG-----UCGCUGCC-------------UCGGUCACa--GC- -5'
10595 3' -57.8 NC_002687.1 + 307716 0.67 0.92623
Target:  5'- -gCCGACAGCGAUGGugacggcaucaacgaAGgCAGUGgugaCGa -3'
miRNA:   3'- aaGGCUGUCGCUGCC---------------UCgGUCACa---GC- -5'
10595 3' -57.8 NC_002687.1 + 307066 0.67 0.918967
Target:  5'- cUCCGGCGGUacauCGGAcaGCUAGUGUUa -3'
miRNA:   3'- aAGGCUGUCGcu--GCCU--CGGUCACAGc -5'
10595 3' -57.8 NC_002687.1 + 10327 0.67 0.907872
Target:  5'- --gCGGCAGUGGCGGcGGCaguuguggCAGUGUCa -3'
miRNA:   3'- aagGCUGUCGCUGCC-UCG--------GUCACAGc -5'
10595 3' -57.8 NC_002687.1 + 211377 0.67 0.907872
Target:  5'- cUuuGACAGCGACGG-GUCuGcGUCa -3'
miRNA:   3'- aAggCUGUCGCUGCCuCGGuCaCAGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.